plaP:Evolution: Difference between revisions

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deleting Pfam from accessions table on evolution pages
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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00324 PF00324  Amino acid permease]
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[[EcoCyc]]
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EcoCyc:EG11896
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11896
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001826
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1842
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0006696
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:33, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016290 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000016984 (score: 0.339)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000012050 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00016806 (score: 1.000; bootstrap: 100%)
  • WBGene00017747 (score: 0.456)
  • WBGene00015197 (score: 0.455)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018906 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000016866 (score: 0.384)
  • ENSCINP00000002795 (score: 0.277)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030919-2 (score: 1.000; bootstrap: 86%)
  • ZDB-CDNA-041114-206 (score: 0.303)
  • ZDB-GENE-041114-206 (score: 0.303)
  • ZDB-CDNA-041212-7 (score: 0.300)
  • ZDB-GENE-041212-5 (score: 0.300)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185190 (score: 1.000; bootstrap: 89%)
  • DDB0189300 (score: 1.000; bootstrap: 82%)
  • DDB0205912 (score: 0.262)

From Inparanoid:20070104

Mus musculus

  • MGI:2146512 (score: 1.000; bootstrap: 100%)
  • MGI:88117 (score: 0.314)
  • MGI:99828 (score: 0.295)
  • MGI:1100521 (score: 0.294)
  • MGI:3040688 (score: 0.229)

From Inparanoid:20070104

Oryza gramene

  • Q7X636 (score: 1.000; bootstrap: 87%)
  • Q53QH5 (score: 0.448)
  • Q9LD96 (score: 0.282)
  • Q5Z6S8 (score: 0.266)
  • Q6AST5 (score: 0.208)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC5843 (score: 1.000; bootstrap: 64%)
  • SPCC744 (score: 0.493)
  • SPAC10391 (score: 0.441)
  • SPBC15C44c (score: 0.210)
  • SPAC11D38c (score: 0.167)
  • SPAPB24D32c (score: 0.148)
  • SPAC90 (score: 0.068)
  • SPCC7943 (score: 0.052)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140033 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000132890 (score: 0.503)
  • NEWSINFRUP00000151033 (score: 0.502)
  • NEWSINFRUP00000136276 (score: 0.311)
  • NEWSINFRUP00000135371 (score: 0.302)

From Inparanoid:20070104

Shigella flexneri

YEEF

From SHIGELLACYC

E. coli O157

YEEF

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00324 Amino acid permease

EcoCyc

EcoCyc:EG11896

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11896

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001826

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1842

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006696

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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