dnaX:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Edited by wikibot
touch
 
(15 intermediate revisions by 2 users not shown)
Line 25: Line 25:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' {{Prettytable}} id='207729'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46aba30a80dc3"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 39: Line 39:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-
|-  
|
|
''E. coli'' O157  
''E. coli'' O157  
Line 46: Line 46:
|
|
From ECOO157CYC  
From ECOO157CYC  
|-
|-  
|
|
''Anopheles gambiae''   
''Anopheles gambiae''   
Line 56: Line 56:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Apis mellifera''   
''Apis mellifera''   
Line 63: Line 63:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
Line 74: Line 74:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Bos taurus''   
''Bos taurus''   
Line 83: Line 83:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
Line 94: Line 94:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
Line 104: Line 104:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Canis familiaris''   
''Canis familiaris''   
Line 113: Line 113:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Ciona intestinalis''   
''Ciona intestinalis''   
Line 123: Line 123:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Danio rerio''   
''Danio rerio''   
Line 137: Line 137:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
Line 147: Line 147:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila melanogaster''   
''Drosophila melanogaster''   
Line 157: Line 157:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
Line 166: Line 166:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Gallus gallus''   
''Gallus gallus''   
Line 175: Line 175:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Homo sapiens''   
''Homo sapiens''   
Line 184: Line 184:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Macaca mulatta''   
''Macaca mulatta''   
Line 193: Line 193:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Monodelphis domestica''   
''Monodelphis domestica''   
Line 203: Line 203:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Mus musculus''   
''Mus musculus''   
Line 212: Line 212:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Oryza gramene''   
''Oryza gramene''   
Line 225: Line 225:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Pan troglodytes''   
''Pan troglodytes''   
Line 234: Line 234:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Rattus norvegicus''   
''Rattus norvegicus''   
Line 244: Line 244:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
Line 254: Line 254:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
Line 263: Line 263:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Takifugu rubripes''   
''Takifugu rubripes''   
Line 273: Line 273:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
Line 283: Line 283:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Xenopus tropicalis''   
''Xenopus tropicalis''   
Line 290: Line 290:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44915.U46aba30a80dc3&page=44915&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44915.U46aba30a80dc3&page=44915&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44915.U46aba30a80dc3-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.44915.U46aba30a80dc3-->
{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
Line 311: Line 312:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' {{Prettytable}} id='207730'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46aba30bacea4"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF00004 PF00004  ATPase family associated with various cellular activities (AAA)]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=48019 SUPERFAMILY:48019]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
|
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00004 PFAM:PF00004]
[http://pfam.janelia.org/family/PF12168 PF12168  DNA polymerase III subunits tau domain IV DnaB-binding]
|
|
   
   
|-class='sortbottom'
|-
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44915.F46aba30bacea4&page=44915&pagename={{FULLPAGENAMEE}} edit table] || ||
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF12169 PF12169  DNA polymerase III subunits gamma and tau domain III]
|
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF12170 PF12170  DNA polymerase III tau subunit V interacting with alpha]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG10245
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10245
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000239
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0241
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0001633
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44915.F46aba30bacea4&page=44915&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44915.F46aba30bacea4-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.44915.F46aba30bacea4-->
{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
Line 339: Line 411:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='207731'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46aba30c3f8a0"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44915.Y46aba30c3f8a0&page=44915&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44915.Y46aba30c3f8a0&page=44915&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44915.Y46aba30c3f8a0-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.44915.Y46aba30c3f8a0-->
{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Shigella flexneri

DNAX

From SHIGELLACYC

E. coli O157

DNAX

From ECOO157CYC

Anopheles gambiae

  • ENSANGP00000009446 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000009970 (score: 0.227)
  • ENSANGP00000020452 (score: 0.200)
  • ENSANGP00000019592 (score: 0.060)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000020376 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G24790 (score: 1.000; bootstrap: 99%)
  • AT1G14460 (score: 0.150)
  • AT2G02480 (score: 0.145)
  • AT5G45720 (score: 0.116)
  • AT4G18820 (score: 0.108)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000029589 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000019600 (score: 0.242)
  • ENSBTAP00000024740 (score: 0.220)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041450 (score: 1.000; bootstrap: 100%)
  • WBGene00041400 (score: 0.204)
  • WBGene00042646 (score: 0.163)
  • WBGene00036412 (score: 0.163)
  • WBGene00025012 (score: 0.056)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00018409 (score: 1.000; bootstrap: 100%)
  • WBGene00004340 (score: 0.184)
  • WBGene00004338 (score: 0.182)
  • WBGene00004339 (score: 0.062)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000014551 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000020162 (score: 0.230)
  • ENSCAFP00000017619 (score: 0.227)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000006132 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000011627 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000010059 (score: 0.238)
  • ENSCINP00000014206 (score: 0.085)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040907-1 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-313 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040824-3 (score: 0.250)
  • ZDB-CDNA-050306-29 (score: 0.243)
  • ZDB-GENE-050306-29 (score: 0.243)
  • ZDB-CDNA-040425-3129 (score: 0.141)
  • ZDB-CDNA-040425-743 (score: 0.060)
  • ZDB-GENE-020809-3 (score: 0.060)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0232233 (score: 1.000; bootstrap: 100%)
  • DDB0232229 (score: 0.262)
  • DDB0232231 (score: 0.197)
  • DDB0232232 (score: 0.058)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0030871 (score: 1.000; bootstrap: 100%)
  • FBgn0032244 (score: 0.218)
  • FBgn0015287 (score: 0.179)
  • FBgn0028700 (score: 0.059)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20846-PA (score: 1.000; bootstrap: 100%)
  • GA13416-PA (score: 0.198)
  • GA19473-PA (score: 0.053)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000014146 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000001978 (score: 0.221)
  • ENSGALP00000027512 (score: 0.089)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000229043 (score: 1.000; bootstrap: 100%)
  • ENSP00000296273 (score: 0.236)
  • ENSP00000055077 (score: 0.234)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000013401 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000005124 (score: 0.237)
  • ENSMMUP00000004943 (score: 0.200)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019178 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000026610 (score: 0.256)
  • ENSMODP00000023216 (score: 0.137)
  • ENSMODP00000012200 (score: 0.056)

From Inparanoid:20070104

Mus musculus

  • MGI:1919401 (score: 1.000; bootstrap: 100%)
  • MGI:2146571 (score: 0.222)
  • MGI:1341868 (score: 0.220)

From Inparanoid:20070104

Oryza gramene

  • Q6YZ54 (score: 1.000; bootstrap: 100%)
  • Q9FXT5 (score: 0.989)
  • Q9FXM3 (score: 0.200)
  • Q7XRX1 (score: 0.197)
  • Q948P2 (score: 0.197)
  • Q84N07 (score: 0.064)
  • Q852K3 (score: 0.063)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000027044 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000032987 (score: 0.137)
  • ENSPTRP00000009832 (score: 0.079)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000001498 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000048060 (score: 0.718)
  • ENSRNOP00000002487 (score: 0.230)
  • ENSRNOP00000001989 (score: 0.216)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YJR068W (score: 1.000; bootstrap: 100%)
  • YNL290W (score: 0.185)
  • YOL094C (score: 0.167)
  • YBR087W (score: 0.066)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC27E20c (score: 1.000; bootstrap: 100%)
  • SPAC23D32 (score: 0.213)
  • SPAC16873c (score: 0.186)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000164364 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000156214 (score: 0.252)
  • NEWSINFRUP00000128611 (score: 0.241)
  • NEWSINFRUP00000170318 (score: 0.064)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00029055001 (score: 1.000; bootstrap: 100%)
  • GSTENP00027867001 (score: 0.235)
  • GSTENP00019812001 (score: 0.235)
  • GSTENP00018858001 (score: 0.060)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002222 (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00004 ATPase family associated with various cellular activities (AAA)

Superfamily (EcoliWiki Page)

SUPERFAMILY:48019

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Pfam (EcoliWiki Page)

PF12168 DNA polymerase III subunits tau domain IV DnaB-binding

Pfam (EcoliWiki Page)

PF12169 DNA polymerase III subunits gamma and tau domain III

Pfam (EcoliWiki Page)

PF12170 DNA polymerase III tau subunit V interacting with alpha

EcoCyc

EcoCyc:EG10245

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10245

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000239

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0241

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001633

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=dnaX:Evolution&oldid=1389171"