kefA:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Fixing references section.
touch
 
(7 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46aba2c3574fd"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 180: Line 180:
From ECOO157CYC  
From ECOO157CYC  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44905.V46aba2c3574fd&page=44905&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44905.V46aba2c3574fd&page=44905&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44905.V46aba2c3574fd-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.44905.V46aba2c3574fd-->
Line 205: Line 205:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46aba2da1fc53"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00924 PFAM:PF00924]
[http://pfam.janelia.org/family/PF00924 PF00924 Mechanosensitive ion channel]
|
|
   
   
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50182 SUPERFAMILY:50182]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=82689 SUPERFAMILY:82689]
|
|-
|
[[EcoCyc]]
|
EcoCyc:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44905.D46aba2da1fc53&page=44905&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44905.D46aba2da1fc53&page=44905&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44905.D46aba2da1fc53-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.44905.D46aba2da1fc53-->
Line 234: Line 283:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46a7f1a49eca9"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44905.E46a7f1a49eca9&page=44905&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44905.E46a7f1a49eca9&page=44905&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44905.E46a7f1a49eca9-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.44905.E46a7f1a49eca9-->

Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000009033 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000001378 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039942 (score: 1.000; bootstrap: 100%)
  • WBGene00039941 (score: 0.443)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00018317 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024846 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000009329 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012164 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000010710 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000344655 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000001218 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000012986 (score: 0.251)
  • ENSMMUP00000014333 (score: 0.054)
  • ENSMMUP00000016639 (score: 0.053)
  • ENSMMUP00000006853 (score: 0.050)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000013565 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000021428 (score: 0.094)
  • ENSMODP00000023725 (score: 0.056)
  • ENSMODP00000012498 (score: 0.055)

From Inparanoid:20070104

Mus musculus

  • MGI:1924298 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q5KQK3 (score: 1.000; bootstrap: 100%)
  • Q5VR43 (score: 0.473)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000005162 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000013322 (score: 0.055)
  • ENSPTRP00000014947 (score: 0.054)
  • ENSPTRP00000014897 (score: 0.052)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000023153 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000029680 (score: 0.082)
  • ENSRNOP00000028432 (score: 0.065)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000157441 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000160962 (score: 0.431)
  • NEWSINFRUP00000142957 (score: 0.194)
  • NEWSINFRUP00000162893 (score: 0.174)
  • NEWSINFRUP00000143156 (score: 0.064)
  • NEWSINFRUP00000156946 (score: 0.060)
  • NEWSINFRUP00000181188 (score: 0.052)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000029450 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

AEFA

From SHIGELLACYC

E. coli O157

AEFA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00924 Mechanosensitive ion channel

Superfamily (EcoliWiki Page)

SUPERFAMILY:50182

Superfamily (EcoliWiki Page)

SUPERFAMILY:82689

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=kefA:Evolution&oldid=1389167"