kefA:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00924 PF00924  Mechanosensitive ion channel]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50182 SUPERFAMILY:50182]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00924 PFAM:PF00924]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=82689 SUPERFAMILY:82689]
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[[EcoCyc]]
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EcoCyc:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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__NOTOC__
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===Categories===
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Latest revision as of 08:30, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000009033 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000001378 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039942 (score: 1.000; bootstrap: 100%)
  • WBGene00039941 (score: 0.443)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00018317 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024846 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000009329 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012164 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000010710 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000344655 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000001218 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000012986 (score: 0.251)
  • ENSMMUP00000014333 (score: 0.054)
  • ENSMMUP00000016639 (score: 0.053)
  • ENSMMUP00000006853 (score: 0.050)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000013565 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000021428 (score: 0.094)
  • ENSMODP00000023725 (score: 0.056)
  • ENSMODP00000012498 (score: 0.055)

From Inparanoid:20070104

Mus musculus

  • MGI:1924298 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q5KQK3 (score: 1.000; bootstrap: 100%)
  • Q5VR43 (score: 0.473)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000005162 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000013322 (score: 0.055)
  • ENSPTRP00000014947 (score: 0.054)
  • ENSPTRP00000014897 (score: 0.052)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000023153 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000029680 (score: 0.082)
  • ENSRNOP00000028432 (score: 0.065)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000157441 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000160962 (score: 0.431)
  • NEWSINFRUP00000142957 (score: 0.194)
  • NEWSINFRUP00000162893 (score: 0.174)
  • NEWSINFRUP00000143156 (score: 0.064)
  • NEWSINFRUP00000156946 (score: 0.060)
  • NEWSINFRUP00000181188 (score: 0.052)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000029450 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

AEFA

From SHIGELLACYC

E. coli O157

AEFA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00924 Mechanosensitive ion channel

Superfamily (EcoliWiki Page)

SUPERFAMILY:50182

Superfamily (EcoliWiki Page)

SUPERFAMILY:82689

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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