rrlH:Gene Product(s): Difference between revisions

Standard name	23S rRNA
Synonyms	23S rRNA (rrlH)^[1], 23S rRNA (rrlG)^[1], 23S rRNA (rrlD)^[1], 23S rRNA (rrlC)^[1], 23S rRNA (rrlA)^[1], 23S rRNA (rrlB)^[1], 23S rRNA (rrlE)^[1], rrlH^[2]^[1], rrnH^[2]^[1]
Product description	rrlH 23S ribosomal RNA^[2]^[3]; Component of 50S ribosomal subunit^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of 50S ribosomal subunit	could be indirect
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Type	rRNA
Sequence	GGUUAAGCGA CUAAGCGUAC ACGGUGGAUG CCCUGGCAGU CAGAGGCGAU GAAGGACGUG CUAAUCUGCG AUAAGCGUCG GUAAGGUGAU AUGAACCGUU AUAACCGGCG AUUUCCGAAU GGGGAAACCC AGUGUGUUUC GACACACUAU CAUUAACUGA AUCCAUAGGU UAAUGAGGCG AACCGGGGGA ACUGAAACAU CUAAGUACCC CGAGGAAAAG AAAUCAACCG AGAUUCCCCC AGUAGCGGCG AGCGAACGGG GAGGAGCCCA GAGCCUGAAU CAGUGUGUGU GUUAGUGGAA GCGUCUGGAA AGGCGCGCGA UACAGGGUGA CAGCCCCGUA CACAAAAAUG CACAUGCUGU GAGCUCGAUG AGUAGGGCGG GACACGUGGU AUCCUGUCUG AAUAUGGGGG GACCAUCCUC CAAGGCUAAA UACUCCUGAC UGACCGAUAG UGAACCAGUA CCGUGAGGGA AAGGCGAAAA GAACCCCGGC GAGGGGAGUG AAAAAGAACC UGAAACCGUG UACGUACAAG CAGUGGGAGC AUGCUUAGGC GUGUGACUGC GUACCUUUUG UAUAAUGGGU CAGCGACUUA UAUUCUGUAG CAAGGUUAAC CGAAUAGGGG AGCCGAAGGG AAACCGAGUC UUAACUGGGC GUUAAGUUGC AGGGUAUAGA CCCGAAACCC GGUGAUCUAG CCAUGGGCAG GUUGAAGGUU GGGUAACACU AACUGGAGGA CCGAACCGAC UAAUGUUGAA AAAUUAGCGG AUGACUUGUG GCUGGGGGUG AAAGGCCAAU CAAACCGGGA GAUAGCUGGU UCUCCCCGAA AGCUAUUUAG GUAGCGCCUC GUGAACUCAU CUCCGGGGGU AGAGCACUGU UUCGGCAAGG GGGUCAUCCC GACUUACCAA CCCGAUGCAA ACUGCGAAUA CCGGAGAAUG UUAUCACGGG AGACACACGG CGGGUGCUAA CGUCCGUCGU GAAGAGGGAA ACAACCCAGA CCGCCAGCUA AGGUCCCAAA GUCAUGGUUA AGUGGGAAAC GAUGUGGGAA GGCCCAGACA GCCAGGAUGU UGGCUUAGAA GCAGCCAUCA UUUAAAGAAA GCGUAAUAGC UCACUGGUCG AGUCGGCCUG CGCGGAAGAU GUAACGGGGC UAAACCAUGC ACCGAAGCUG CGGCAGCGAC GCUUAUGCGU UGUUGGGUAG GGGAGCGUUC UGUAAGCCUG UGAAGGUGUA CUGUGAGGUA UGCUGGAGGU AUCAGAAGUG CGAAUGCUGA CAUAAGUAAC GAUAAAGCGG GUGAAAAGCC CGCUCGCCGG AAGACCAAGG GUUCCUGUCC AACGUUAAUC GGGGCAGGGU GAGUCGACCC CUAAGGCGAG GCCGAAAGGC GUAGUCGAUG GGAAACAGGU UAAUAUUCCU GUACUUGGUG UUACUGCGAA GGGGGGACGG AGAAGGCUAU GUUGGCCGGG CGACGGUUGU CCCGGUUUAA GCGUGUAGGC UGGUUUUCCA GGCAAAUCCG GAAAAUCAAG GCUGAGGCGU GAUGACGAGG CACUACGGUG CUGAAGCAAC AAAUGCCCUG CUUCCAGGAA AAGCCUCUAA GCAUCAGGUA ACAUCAAAUC GUACCCCAAA CCGACACAGG UGGUCAGGUA GAGAAUACCA AGGCGCUUGA GAGAACUCGG GUGAAGGAAC UAGGCAAAAU GGUGCCGUAA CUUCGGGAGA AGGCACGCUG AUAUGUAGGU GAAGCGACUU GCUCGUGGAG CUGAAAUCAG UCGAAGAUAC CAGCUGGCUG CAACUGUUUA UUAAAAACAC AGCACUGUGC AAACACGAAA GUGGACGUAU ACGGUGUGAC GCCUGCCCGG UGCCGGAAGG UUAAUUGAUG GGGUUAGCGC AAGCGAAGCU CUUGAUCGAA GCCCCGGUAA ACGGCGGCCG UAACUAUAAC GGUCCUAAGG UAGCGAAAUU CCUUGUCGGG UAAGUUCCGA CCUGCACGAA UGGCGUAAUG AUGGCCAGGC UGUCUCCACC CGAGACUCAG UGAAAUUGAA CUCGCUGUGA AGAUGCAGUG UACCCGCGGC AAGACGGAAA GACCCCGUGA ACCUUUACUA UAGCUUGACA CUGAACAUUG AGCCUUGAUG UGUAGGAUAG GUGGGAGGCU UUGAAGUGUG GACGCCAGUC UGCAUGGAGC CGACCUUGAA AUACCACCCU UUAAUGUUUG AUGUUCUAAC GUUGACCCGU AAUCCGGGUU GCGGACAGUG UCUGGUGGGU AGUUUGACUG GGGCGGUCUC CUCCUAAAGA GUAACGGAGG AGCACGAAGG UUGGCUAAUC CUGGUCGGAC AUCAGGAGGU UAGUGCAAUG GCAUAAGCCA GCUUGACUGC GAGCGUGACG GCGCGAGCAG GUGCGAAAGC AGGUCAUAGU GAUCCGGUGG UUCUGAAUGG AAGGGCCAUC GCUCAACGGA UAAAAGGUAC UCCGGGGAUA ACAGGCUGAU ACCGCCCAAG AGUUCAUAUC GACGGCGGUG UUUGGCACCU CGAUGUCGGC UCAUCACAUC CUGGGGCUGA AGUAGGUCCC AAGGGUAUGG CUGUUCGCCA UUUAAAGUGG UACGCGAGCU GGGUUUAGAA CGUCGUGAGA CAGUUCGGUC CCUAUCUGCC GUGGGCGCUG GAGAACUGAG GGGGGCUGCU CCUAGUACGA GAGGACCGGA GUGGACGCAU CACUGGUGUU CGGGUUGUCA UGCCAAUGGC ACUGCCCGGU AGCUAAAUGC GGAAGAGAUA AGUGCUGAAA GCAUCUAAGC ACGAAACUUG CCCCGAGAUG AGUUCUCCCU GACUCCUUGA GAGUCCUGAA GGAACGUUGA AGACGACGAC GUUGAUAGGC CGGGUGUGUA AGCGCAGCGA UGCGUUGAGC UAACCGGUAC UAAUGAACCG UGAGGCUUAA CCUU
Mol. Wt	941816.03
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rrlH taxon=562,83333 </beststructure>

Models

View models at:

PSI-PRED
Genomes TO Protein (GTOP)

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG30083	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG30083	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002525	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB4246	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0000684	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

rrlH:Gene Product(s): Difference between revisions

Latest revision as of 07:38, 27 May 2013

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 18: / Line 18: @@
 |{{Sub}}[[#Localization |Localization]]
 |{{Sub}}[[#Sequence|Sequence]]
+|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
 |{{Sub}}[[#Structure|Structure]]
 |{{Sub}}[[#Gene Product Resources|Resources]]
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 <!--
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+****************************************************************************************** -->{{Product_nomenclature_help}}
-{|{{Prettytable}}
+{|   id="E46aa2329625f2"  class=" tableEdit Product_nomenclature_table"
 |-
-!{{table heading style}} |Standard name
+!align=left {{table heading style}} |Standard name
-|
+||
 S rRNA
 |-
-!{{table heading style}} |Synonyms
+!align=left {{table heading style}} |Synonyms
-|
+||
-S rRNA (rrlH) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlG) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlD) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlC) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlA) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlB) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlE) product<ref name='LIB:Riley_2006'/>, rrlH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, rrnH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+S rRNA (rrlH)<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlG)<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlD)<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlC)<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlA)<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlB)<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlE)<ref name='LIB:Riley_2006'/>, rrlH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, rrnH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
 |-
-!{{table heading style}} |Product description
+!align=left {{table heading style}} |Product description
-|
+||
 rrlH 23S ribosomal RNA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
-Component of ; [[:Category:Complex:50S ribosomal subunit|50S ribosomal subunit]]<ref name='LIB:EcoCyc11.1'/>
+Component of [[:Category:Complex:50S ribosomal subunit|50S ribosomal subunit]]<ref name='LIB:EcoCyc11.1'/>
 |-
-!{{table heading style}} |EC number (for enzymes)
+!align=left {{table heading style}} |EC number (for enzymes)
-|
+||
-*
-|-
-|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.E46aa2329625f2&page=19995&pagename={{FULLPAGENAMEE}} edit table]
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.E46aa2329625f2&page=19995&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
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 {{BacktoTop}}
 <protect>
-<big>'''Gene Ontology'''</big><br />{{Product_GO_help}}<!--box uid=421aa90e079fa326b6494f812ad13e79.19995.H46aa232acc094-->
+<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.19995.H46aa232acc094-->
 <!--
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+****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' {{Prettytable}} id='152916'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46aa232acc094"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
-|-
-|
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.H46aa232acc094&page=19995&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
-|
-GO:0016072
-|
-rRNA metabolic process
-|
-|
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
-|-
-|
-|
-GO:0009281
-|
-cytosolic ribosome (sensu Bacteria)
-|
-|
-|
-|
-C
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
-|-
-|
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-GO:0006412
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-translation
-|
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-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
-|-
-|
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-GO:0005737
-|
-cytoplasm
-|
-|
-|
-|
-C
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.H46aa232acc094&page=19995&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
 |}
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 <!--
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+****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' {{Prettytable}} id='152917'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46aa2339781f0"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
-!Partner Type!!Partner!!Notes
+!|Partner Type!!Partner!!Notes!!References!!Evidence
 |-
 |
 Protein
@@ Line 174: / Line 102: @@
 Subunits of [[:Category:Complex:50S ribosomal subunit|50S ribosomal subunit]]
 |
 could be indirect
-|-class='sortbottom'
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-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.V46aa2339781f0&page=19995&pagename={{FULLPAGENAMEE}} edit table] || ||
+|
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.V46aa2339781f0&page=19995&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19995.V46aa2339781f0-->
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 <!--Function_notes--></protect>
 ===Notes===
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 <!--
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+****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' {{Prettytable}} id='102222'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46a7b46c56824"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.H46a7b46c56824&page=19995&pagename={{FULLPAGENAMEE}} edit table] || || ||
+|- class="tableEdit_footer"
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 |}
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 <protect>
 <span id="Sequence"></span><big>'''Physical Properties'''</big>
-<!--box uid=421aa90e079fa326b6494f812ad13e79.19995.O46aa233b8d9e9-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.19995.S49de44838b565-->
 <!--
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 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
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-{|{{Prettytable}}
+{|   id="S49de44838b565"  class=" tableEdit Product_RNA_prop_table"
 |-
-!{{table heading style}} |Sequence
+!align=left {{table heading style}} |Type
-|
+||
-[http://biocyc.org/ECOLI/sequence-rna?type=GENERIC-RNA&object=RRLH-RRNA at EcoCyc]
+rRNA
 |-
-!{{table heading style}} |Mol. Wt
+!align=left {{table heading style}} |Sequence
-|
+||
+<pre>GGUUAAGCGA CUAAGCGUAC ACGGUGGAUG CCCUGGCAGU CAGAGGCGAU GAAGGACGUG
+CUAAUCUGCG AUAAGCGUCG GUAAGGUGAU AUGAACCGUU AUAACCGGCG AUUUCCGAAU
+GGGGAAACCC AGUGUGUUUC GACACACUAU CAUUAACUGA AUCCAUAGGU UAAUGAGGCG
+AACCGGGGGA ACUGAAACAU CUAAGUACCC CGAGGAAAAG AAAUCAACCG AGAUUCCCCC
+AGUAGCGGCG AGCGAACGGG GAGGAGCCCA GAGCCUGAAU CAGUGUGUGU GUUAGUGGAA
+GCGUCUGGAA AGGCGCGCGA UACAGGGUGA CAGCCCCGUA CACAAAAAUG CACAUGCUGU
+GAGCUCGAUG AGUAGGGCGG GACACGUGGU AUCCUGUCUG AAUAUGGGGG GACCAUCCUC
+CAAGGCUAAA UACUCCUGAC UGACCGAUAG UGAACCAGUA CCGUGAGGGA AAGGCGAAAA
+GAACCCCGGC GAGGGGAGUG AAAAAGAACC UGAAACCGUG UACGUACAAG CAGUGGGAGC
+AUGCUUAGGC GUGUGACUGC GUACCUUUUG UAUAAUGGGU CAGCGACUUA UAUUCUGUAG
+CAAGGUUAAC CGAAUAGGGG AGCCGAAGGG AAACCGAGUC UUAACUGGGC GUUAAGUUGC
+AGGGUAUAGA CCCGAAACCC GGUGAUCUAG CCAUGGGCAG GUUGAAGGUU GGGUAACACU
+AACUGGAGGA CCGAACCGAC UAAUGUUGAA AAAUUAGCGG AUGACUUGUG GCUGGGGGUG
+AAAGGCCAAU CAAACCGGGA GAUAGCUGGU UCUCCCCGAA AGCUAUUUAG GUAGCGCCUC
+GUGAACUCAU CUCCGGGGGU AGAGCACUGU UUCGGCAAGG GGGUCAUCCC GACUUACCAA
+CCCGAUGCAA ACUGCGAAUA CCGGAGAAUG UUAUCACGGG AGACACACGG CGGGUGCUAA
+CGUCCGUCGU GAAGAGGGAA ACAACCCAGA CCGCCAGCUA AGGUCCCAAA GUCAUGGUUA
+AGUGGGAAAC GAUGUGGGAA GGCCCAGACA GCCAGGAUGU UGGCUUAGAA GCAGCCAUCA
+UUUAAAGAAA GCGUAAUAGC UCACUGGUCG AGUCGGCCUG CGCGGAAGAU GUAACGGGGC
+UAAACCAUGC ACCGAAGCUG CGGCAGCGAC GCUUAUGCGU UGUUGGGUAG GGGAGCGUUC
+UGUAAGCCUG UGAAGGUGUA CUGUGAGGUA UGCUGGAGGU AUCAGAAGUG CGAAUGCUGA
+CAUAAGUAAC GAUAAAGCGG GUGAAAAGCC CGCUCGCCGG AAGACCAAGG GUUCCUGUCC
+AACGUUAAUC GGGGCAGGGU GAGUCGACCC CUAAGGCGAG GCCGAAAGGC GUAGUCGAUG
+GGAAACAGGU UAAUAUUCCU GUACUUGGUG UUACUGCGAA GGGGGGACGG AGAAGGCUAU
+GUUGGCCGGG CGACGGUUGU CCCGGUUUAA GCGUGUAGGC UGGUUUUCCA GGCAAAUCCG
+GAAAAUCAAG GCUGAGGCGU GAUGACGAGG CACUACGGUG CUGAAGCAAC AAAUGCCCUG
+CUUCCAGGAA AAGCCUCUAA GCAUCAGGUA ACAUCAAAUC GUACCCCAAA CCGACACAGG
+UGGUCAGGUA GAGAAUACCA AGGCGCUUGA GAGAACUCGG GUGAAGGAAC UAGGCAAAAU
+GGUGCCGUAA CUUCGGGAGA AGGCACGCUG AUAUGUAGGU GAAGCGACUU GCUCGUGGAG
+CUGAAAUCAG UCGAAGAUAC CAGCUGGCUG CAACUGUUUA UUAAAAACAC AGCACUGUGC
+AAACACGAAA GUGGACGUAU ACGGUGUGAC GCCUGCCCGG UGCCGGAAGG UUAAUUGAUG
+GGGUUAGCGC AAGCGAAGCU CUUGAUCGAA GCCCCGGUAA ACGGCGGCCG UAACUAUAAC
+GGUCCUAAGG UAGCGAAAUU CCUUGUCGGG UAAGUUCCGA CCUGCACGAA UGGCGUAAUG
+AUGGCCAGGC UGUCUCCACC CGAGACUCAG UGAAAUUGAA CUCGCUGUGA AGAUGCAGUG
+UACCCGCGGC AAGACGGAAA GACCCCGUGA ACCUUUACUA UAGCUUGACA CUGAACAUUG
+AGCCUUGAUG UGUAGGAUAG GUGGGAGGCU UUGAAGUGUG GACGCCAGUC UGCAUGGAGC
+CGACCUUGAA AUACCACCCU UUAAUGUUUG AUGUUCUAAC GUUGACCCGU AAUCCGGGUU
+GCGGACAGUG UCUGGUGGGU AGUUUGACUG GGGCGGUCUC CUCCUAAAGA GUAACGGAGG
+AGCACGAAGG UUGGCUAAUC CUGGUCGGAC AUCAGGAGGU UAGUGCAAUG GCAUAAGCCA
+GCUUGACUGC GAGCGUGACG GCGCGAGCAG GUGCGAAAGC AGGUCAUAGU GAUCCGGUGG
+UUCUGAAUGG AAGGGCCAUC GCUCAACGGA UAAAAGGUAC UCCGGGGAUA ACAGGCUGAU
+ACCGCCCAAG AGUUCAUAUC GACGGCGGUG UUUGGCACCU CGAUGUCGGC UCAUCACAUC
+CUGGGGCUGA AGUAGGUCCC AAGGGUAUGG CUGUUCGCCA UUUAAAGUGG UACGCGAGCU
+GGGUUUAGAA CGUCGUGAGA CAGUUCGGUC CCUAUCUGCC GUGGGCGCUG GAGAACUGAG
+GGGGGCUGCU CCUAGUACGA GAGGACCGGA GUGGACGCAU CACUGGUGUU CGGGUUGUCA
+UGCCAAUGGC ACUGCCCGGU AGCUAAAUGC GGAAGAGAUA AGUGCUGAAA GCAUCUAAGC
+ACGAAACUUG CCCCGAGAUG AGUUCUCCCU GACUCCUUGA GAGUCCUGAA GGAACGUUGA
+AGACGACGAC GUUGAUAGGC CGGGUGUGUA AGCGCAGCGA UGCGUUGAGC UAACCGGUAC
+UAAUGAACCG UGAGGCUUAA CCUU
+</pre>
 |-
-!{{table heading style}} |pI
+!align=left {{table heading style}} |Mol. Wt
-|
+||
+.03
-|-
-!{{table heading style}} |Extinction coefficient
+|- class="tableEdit_footer"
-|
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-|-
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 |}
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+<!--box uid=421aa90e079fa326b6494f812ad13e79.19995.S49de44838b565-->
-{{Product_physical_properties_help}}
-==Domains/Motifs/Modification Sites==
+<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
-<!--box uid=421aa90e079fa326b6494f812ad13e79.19995.S46aa233be6087-->
+<tr align="left" valign="top">
+<td><!--box uid=421aa90e079fa326b6494f812ad13e79.19995.S46aa233be6087-->
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
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-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' {{Prettytable}} id='152919'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46aa233be6087"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.S46aa233be6087&page=19995&pagename={{FULLPAGENAMEE}} edit table] || || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.S46aa233be6087&page=19995&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
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+<!--box uid=421aa90e079fa326b6494f812ad13e79.19995.S46aa233be6087--></td>
-{{Product_domains_motifs_help}}
+<td>
+<!-- motifs column 2-->
+<motif_map/>
+</td>
+</tr>
+</table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19995.Z46a7b46dedf5b-->
 <!--
@@ Line 263: / Line 253: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="Z46a7b46dedf5b"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>rrlH
+<beststructure>
-</beststructure>
+gene=rrlH
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=rrlH&sub=keywordSearc EcoliPredict]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=rrlH&organism=562&organismtext= ModBase]
 * [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
 * [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.Z46a7b46dedf5b&page=19995&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.Z46a7b46dedf5b&page=19995&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19995.Z46a7b46dedf5b-->
-{{Product_structure_help}}
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 297: / Line 305: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' {{Prettytable}} id='152920'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46aa233c85042"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
-!Resource type!!Source!!Notes/Reference
+!|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.V46aa233c85042&page=19995&pagename={{FULLPAGENAMEE}} edit table] || ||
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.V46aa233c85042&page=19995&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19995.V46aa233c85042-->
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 <protect><!--Resources_notes--></protect>
 ===Notes===
@@ Line 318: / Line 327: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' {{Prettytable}} id='152921'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z46aa233cce2de"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
-!Database!!Accession!!Notes
+!|Database!!Accession!!Notes
 |-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG30083
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG30083
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[RegulonDB]]
+|
+RegulonDB:ECK120002525
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EchoBASE]]
+|
+EchoBASE:EB4246
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[[ASAP]]
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=RRLH-RRNA EcoCyc:RRLH-RRNA]
+ASAP:ABE-0000684
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
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+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.Z46aa233cce2de&page=19995&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
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 <protect><!--Accessions_notes--></protect>
 ===Notes===
@@ Line 346: / Line 384: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
 ****************************************************************************************** -->
-{|class = 'sortable' {{Prettytable}} id='102225'
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 |- {{table_heading_style}}
-!Name!!URL!!Comments
+!|Name!!URL!!Comments
-|-class='sortbottom'
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+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19995.I46a7b46f0cdf6&page=19995&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
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-{{Links_help}}
@@ Line 365: / Line 404: @@
 {{BacktoTop}}
 {{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:RNA]]
-[[Category:GO:0016072_!_rRNA metabolic process]][[Category:GO:0009281_!_cytosolic ribosome (sensu Bacteria)]][[Category:GO:0006412_!_translation]][[Category:GO:0005737_!_cytoplasm]][[Category:Complex:50S ribosomal subunit]]

rrlH:Gene Product(s): Difference between revisions

Latest revision as of 07:38, 27 May 2013

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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