Sequenced E. coli Genomes: Difference between revisions

Latest revision as of 22:09, 27 July 2010

Go to the E. coli Gene Lists in EcoliWiki

EcoliWiki plans to create gene lists for all available laboratory E. coli K-12, B, and C strains. Although pathogenic strains of E. coli are not the focus of EcoliWiki, numerous strains of E. coli, non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so. Use this table to track which genomes are available and from where. Please add or edit any strains you know are being sequenced or are finished.

Strain	Sequencing status	Accessions (if applicable)	In EcoliWiki	Comments	Taxon ID
MG1655	complete	NC_000913	yes	PMID:9278503^[1]	511145
W3110	complete	AC_000091	yes	PMID:16738553^[2]	316407
DH10B	complete	NC_010473	yes	PMID:18245285^[3] This genome has now been incorporated into EcoliWiki.	316385
REL606	complete	NC_012967	yes	Information about the genes of this E. coli B strain is now available from EcoliWiki International E. coli B Consortium Entrez Genome Project	413997
E. coli BL21 (DE3)	complete	CP001509.3 & NC_012947.1 & CP001665.1	not yet	We are working on adding this strain to EcoliWiki. DOE Joint Genome Institute Entrez Genome Project	469008
E. coli 101-1	in progress	Whole Genome Shotgun Sequence 101-1	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enteroaggregative.	358709
E. coli 53638	in progress	Whole Genome Shotgun Sequence 53638	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enteroinvasive.	344610
E. coli B171	in progress	Whole Genome Shotgun Sequence B171	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enteropathogenic.	344601
E. coli B7A	in progress	Whole Genome Shotgun Sequence B7A	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterotoxigenic.	340184
E. coli E110019	in progress	Whole Genome Shotgun Sequence E110019	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Atypical enteropathogenic.	340186
E. coli E22	in progress	Whole Genome Shotgun Sequence E22	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enteropathogenic.	340185
E. coli E24377A	complete	NC_009801	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterotoxigenic.	331111
E. coli F11	in progress	Whole Genome Shotgun Sequence F11	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Extra-intestinal pathogenic.	340197
E. coli HS	complete	NC_009800	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Human commensal isolate.	331112
E. coli SMS-3-5	complete	NC_010498	no	PMID:18708504^[4] SECEC SMS-3-5 at JCVI Entrez Genome Project Highly antibiotic resistant, including ciprofloxacin & moxifloxacin.	439855
E. coli O157:H7 EC4024	in progress	Whole Genome Shotgun Sequence EC4024	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	444454
E. coli O157:H7 EC4042	in progress	Whole Genome Shotgun Sequence EC4042	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	444449
E. coli O157:H7 EC4045	in progress	Whole Genome Shotgun Sequence EC4045	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	444448
E. coli O157:H7 EC4076	in progress	Whole Genome Shotgun Sequence EC4076	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	444453
E. coli O157:H7 EC4113	in progress	Whole Genome Shotgun Sequence EC4113	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	444452
E. coli O157:H7 EC4115	complete	NC_011353	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	444450
E. coli O157:H7 EC4196	in progress	Whole Genome Shotgun Sequence EC4196	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	444451
E. coli O157:H7 EC4206	in progress	Whole Genome Shotgun Sequence EC4206	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	444447
E. coli O157:H7 EC4401	in progress	Whole Genome Shotgun Sequence EC4401	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	478004
E. coli O157:H7 EC4486	in progress	Whole Genome Shotgun Sequence EC4486	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	478005
E. coli O157:H7 EC4501	in progress	Whole Genome Shotgun Sequence EC4501	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	478006
E. coli O157:H7 EC508	in progress	Whole Genome Shotgun Sequence EC508	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	478007
E. coli O157:H7 TW14359	complete	NC_013008	no	Entrez Genome Project Enterohemorrhagic.	544404
E. coli O157:H7 EC869	in progress	Whole Genome Shotgun Sequence EC869	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	478008
E. coli O157:H7 FRIK966	in progress		no	MBRI Entrez Genome Project Bovine isolate; does not express Shiga toxin.	570506
E. coli O157:H7 TW14588	in progress	Whole Genome Shotgun Sequence TW14588	no	JCVI Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enterohemorrhagic.	502346
E. coli O157:H7 GZ-021210/cattle	in progress		no	Entrez Genome Project Enterohemorrhagic bovine isolate.	410290
E. coli O157:H7	complete	NC_002695	no	PMID:11258796^[5] This strain is also referred to as E. coli O157:H7 Sakai Entrez Genome Project	83334
E. coli APEC O1	complete	NC_008563	no	PMID:17293413^[6] Nolan Lab Bacterial Pathogenesis Laboratory Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project	405955
E. coli UTI89	complete	NC_007946	no	PMID:16585510^[7] Entrez Genome Project	364106
E. coli 042	complete	FN554766	no	Sanger Institute Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Enteroaggregative.	216592
E. coli 536	complete	NC_008253	no	PMID:16879640^[8] University of Gottingen Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Uropathogenic.	362663
E. coli RS218	in progress		no	PMID:16988236^[9] University of Wisconsin Genome Center Entrez Genome Project E. coli K1; Neonatal meningitis E. coli (NMEC).	439184
E. coli CFT073	complete	NC_004431	no	PMID:12471157^[10] University of Wisconsin Genome Center Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project Uropathogenic.	199310
E. coli ATCC 8739	complete	NC_010468	not yet	E. coli Crooks strain (sometimes misnamed as E. coli B strain (see page for ATCC 8739) Joint Genome Institute Enteropathogen Resource Integration Center (ERIC) Entrez Genome Project	481805
E. coli F18+	in progress		no	Entrez Genome Project	488477
E. coli 789 A/C 1	in progress		no	Gottingen Genomics Laboratory
E. coli K-12 LW1655F+	in progress		no	Entrez Genome Project	527799
E. coli NC-7	in progress		not yet	Entrez Genome Project Cell wall-less L-form derivative of E. coli K-12.	531853
E. coli O157:H7 EDL933	complete	NC_002655.2	no	Enteropathogen Resource Integration Center (ERIC) Enterohemorrhagic.	155864
E. coli SE11	complete	NC_011415	no	Entrez Genome Project Human commensal isolate.	409438
E. coli W	in progress		no	Entrez Genome Project	566546
E. coli c7122	in progress		no	Entrez Genome Project	475609
E. coli S88	complete	NC_011742	no	GenoScope Serotype O45:K1 strain, isolated from a case of meningitis.	585035
E. coli ED1a	complete	NC_011745	no	GenoScope Avirulent serogroup O81.	585397
E. coli IAI1	complete	NC_011741	no	GenoScope Serogroup O8.	585034
E. coli IAI39	complete	NC_011750	no	Genoscope Serotype O7:K1.	585057
E. coli 55989	complete	NC_011748	no	PMID:19165319^[11] Pathogenic strain.	585055
E. coli BW2952 MC4100(MuLac)	complete	NC_012759	yes	PMID:19376874^[12]	595496
E.coli UMN026	complete	NC_011751	no	PMID:19165319^[11] Pathogenic strain serotype O17:K52:H18	585056
E.coli O103:H2 str. 12009	complete	NC_013353	no	PMID:19815525^[13] Pathogenic.	585395
E.coli O111:H- str. 11128	complete	NC_013364	no	PMID:19815525^[13] Pathogenic.	585396
E. coli O127:H6 str. E2348/69	complete	NC_011601	no	PMID:18952797^[14] Pathogenic.	574521
E. coli K-12 DH1	complete	CP001637	not yet	Escherichia coli K12 DH1, ATCC 33849
E. coli O55:H7 CB9615	complete	NC_013941	no		701177
E. coli O26:H11 str. 11368	complete	NC_013361	no	enteropathogenic strain, serovar = O26:H11	573235
E. coli IHE3034	complete	CP001969	no	Extraintestinal Pathogenic	714962
E. coli SE15	complete	AP009378]	no	Commensal strain.	431946
edit table

↑ Blattner, FR et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277 1453-62 PubMed
↑ Hayashi, K et al. (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2 2006.0007 PubMed
↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
↑ Fricke, WF et al. (2008) Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. J. Bacteriol. 190 6779-94 PubMed
↑ Hayashi, T et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8 11-22 PubMed
↑ Johnson, TJ et al. (2007) The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. J. Bacteriol. 189 3228-36 PubMed
↑ Chen, SL et al. (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc. Natl. Acad. Sci. U.S.A. 103 5977-82 PubMed
↑ Hochhut, B et al. (2006) Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536. Mol. Microbiol. 61 584-95 PubMed
↑ Teng, CH et al. (2006) Effects of ompA deletion on expression of type 1 fimbriae in Escherichia coli K1 strain RS218 and on the association of E. coli with human brain microvascular endothelial cells. Infect. Immun. 74 5609-16 PubMed
↑ Welch, RA et al. (2002) Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 99 17020-4 PubMed
↑ ^11.0 ^11.1 Touchon, M et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 5 e1000344 PubMed
↑ Ferenci, T et al. (2009) Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. J. Bacteriol. 191 4025-9 PubMed
↑ ^13.0 ^13.1 Ogura, Y et al. (2009) Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 106 17939-44 PubMed
↑ Iguchi, A et al. (2009) Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. J. Bacteriol. 191 347-54 PubMed

[PMID:9278503-1] Blattner, FR et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277 1453-62 PubMed

[PMID:16738553-2] Hayashi, K et al. (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2 2006.0007 PubMed

[PMID:18245285-3] Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed

[PMID:18708504-4] Fricke, WF et al. (2008) Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. J. Bacteriol. 190 6779-94 PubMed

[PMID:11258796-5] Hayashi, T et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8 11-22 PubMed

[PMID:17293413-6] Johnson, TJ et al. (2007) The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. J. Bacteriol. 189 3228-36 PubMed

[PMID:16585510-7] Chen, SL et al. (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc. Natl. Acad. Sci. U.S.A. 103 5977-82 PubMed

[PMID:16879640-8] Hochhut, B et al. (2006) Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536. Mol. Microbiol. 61 584-95 PubMed

[PMID:16988236-9] Teng, CH et al. (2006) Effects of ompA deletion on expression of type 1 fimbriae in Escherichia coli K1 strain RS218 and on the association of E. coli with human brain microvascular endothelial cells. Infect. Immun. 74 5609-16 PubMed

[PMID:12471157-10] Welch, RA et al. (2002) Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 99 17020-4 PubMed

[PMID:19165319-11] 11.0 ^11.1 Touchon, M et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 5 e1000344 PubMed

[PMID:19376874-12] Ferenci, T et al. (2009) Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. J. Bacteriol. 191 4025-9 PubMed

[PMID:19815525-13] 13.0 ^13.1 Ogura, Y et al. (2009) Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 106 17939-44 PubMed

[PMID:18952797-14] Iguchi, A et al. (2009) Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. J. Bacteriol. 191 347-54 PubMed

[1]

[2]

[3]

[4]

[5]

[6]

[7]

[8]

[9]

[10]

[11]

[12]

[13]

[14]

@@ Line 1: / Line 1: @@
+[[:Category:E._coli_genomes|Go to the ''E. coli'' Gene Lists in EcoliWiki]]
 EcoliWiki plans to create gene lists for all available laboratory ''E. coli'' K-12, B, and C strains.  Although pathogenic strains of ''E. coli''  are not the focus of EcoliWiki, numerous strains of ''E. coli'', non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so.  Use this table to track which genomes are available and from where.  Please add or edit any strains you know are being sequenced or are finished.
@@ Line 8: / Line 10: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="P4919ed888b288"  class=" tableEdit Sequenced_strains"
 |- {{TableHeadingColor}}
-!|Strain!!Sequencing status!!Accessions (if applicable)!!In EcoliWiki!!Comments
+!|Strain!!Sequencing status!!Accessions (if applicable)!!In EcoliWiki!!Comments!!Taxon ID
 |-
 |
@@ Line 21: / Line 23: @@
 yes
 |
-[[PMID:9278503]]<ref name=PMID:9278503/>
+PMID:9278503
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=511145 511145]
 |-
 |
@@ Line 32: / Line 36: @@
 yes
 |
-[[PMID:16738553]]<ref name=PMID:16738553/>
+PMID:16738553
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=316407 316407]
 |-
 |
@@ Line 41: / Line 47: @@
 [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_010473 NC_010473]
 |
-not yet
+yes
 |
-[[PMID:18245285]]<ref name=PMID:18245285/>
+PMID:18245285
-This genome will be loaded as soon as possible -
+This genome has now been incorporated into EcoliWiki.
-Nov 11, 2008
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=316385 316385]
 |-
 |
-''Escherichia coli'' (B) REL606
+[[REL606]]
 |
-in progress
+complete
 |
+[http://www.ncbi.nlm.nih.gov/nuccore/NC_012967 NC_012967]
 |
-not yet
+yes
 |
-Will be included in EcoliWiki when made publically available. <br/>
+Information about the genes of this E. coli B strain is now available from EcoliWiki
 [http://www.gem.re.kr/ International E. coli B Consortium]<br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18281 Entrez Genome Project] <br/>
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=413997 413997]
 |-
 |
-''E. coli'' BL21 (DE3)
+[[BL21(DE3)|''E. coli'' BL21 (DE3)]]
 |
-in progress
+complete
 |
+[http://www.ncbi.nlm.nih.gov/nuccore/CP001509.3 CP001509.3] & [http://www.ncbi.nlm.nih.gov/nuccore/NC_012947.1 NC_012947.1] & [http://www.ncbi.nlm.nih.gov/nuccore/CP001665.1 CP001665.1]
 |
 not yet
 |
-Will be included in EcoliWiki when publically available. <br/>
+We are working on adding this strain to EcoliWiki. <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 DOE Joint Genome Institute]<br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 Entrez Genome Project] <br/>
-|-
 |
-''E. coli'' BL21(DE3)
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=469008 469008]
-|
-in progress
-|
-|
-not yet
-|
-Will be included in EcoliWiki when publically available. <br/>
-[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20713 Korea Research Institute of Bioscience and Biotechnology]  <br/>
-[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20713 Entrez Genome Project]
 |-
 |
@@ Line 102: / Line 100: @@
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16193 Entrez Genome Project] <br/>
 Enteroaggregative.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=358709&lvl=3&lin=f&keep=1&srchmode=1&unlock 358709]
 |-
 |
@@ Line 117: / Line 117: @@
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15639 Entrez Genome Project]<br/>
 Enteroinvasive.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=344610&lvl=3&lin=f&keep=1&srchmode=1&unlock 344610]
 |-
 |
@@ Line 131: / Line 133: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15630 Entrez Genome Project]<br/>
 Enteropathogenic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=344601&lvl=3&lin=f&keep=1&srchmode=1&unlock 344601]
 |-
 |
@@ Line 145: / Line 149: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15572 Entrez Genome Project] <br/>
 Enterotoxigenic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340184&lvl=3&lin=f&keep=1&srchmode=1&unlock 340184]
 |-
 |
@@ Line 160: / Line 166: @@
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15578 Entrez Genome Project]<br/>
 Atypical enteropathogenic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340186&lvl=3&lin=f&keep=1&srchmode=1&unlock 340186]
 |-
 |
@@ Line 174: / Line 182: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15577 Entrez Genome Project]<br/>
 Enteropathogenic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340185&lvl=3&lin=f&keep=1&srchmode=1&unlock 340185]
 |-
 |
@@ Line 188: / Line 198: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13960 Entrez Genome Project]<br/>
 Enterotoxigenic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=331111 331111]
 |-
 |
@@ Line 202: / Line 214: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15576 Entrez Genome Project]<br/>
 Extra-intestinal pathogenic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340197&lvl=3&lin=f&keep=1&srchmode=1&unlock 340197]
 |-
 |
@@ Line 216: / Line 230: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13959 Entrez Genome Project]<br/>
 Human commensal isolate.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=331112&lvl=3&lin=f&keep=1&srchmode=1&unlock 331112]
 |-
 |
@@ Line 227: / Line 243: @@
 no
 |
-[[PMID:18708504]]<ref name=PMID:18708504/>
+PMID:18708504
 <br/>
 [http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_secec_sms_3_5/index.shtml SECEC SMS-3-5 at JCVI] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=19469 Entrez Genome Project] <br/>
 Highly antibiotic resistant, including ciprofloxacin & moxifloxacin.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=439855 439855]
 |-
 |
@@ Line 245: / Line 263: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27747 Entrez Genome Project] <br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444454&lvl=3&lin=f&keep=1&srchmode=1&unlock 444454]
 |-
 |
@@ Line 261: / Line 281: @@
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444449&lvl=3&lin=f&keep=1&srchmode=1&unlock 444449]
 |-
 |
@@ Line 276: / Line 298: @@
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27733 Entrez Genome Project] <br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444448&lvl=3&lin=f&keep=1&srchmode=1&unlock 444448]
 |-
 |
@@ Line 291: / Line 315: @@
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27745 Entrez Genome Project]<br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444453&lvl=3&lin=f&keep=1&srchmode=1&unlock 444453]
 |-
 |
@@ Line 306: / Line 332: @@
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27743 Entrez Genome Project]<br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444452&lvl=3&lin=f&keep=1&srchmode=1&unlock 444452]
 |-
 |
@@ Line 320: / Line 348: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27739 Entrez Genome Project]
 <br/>Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=444450 444450]
 |-
 |
@@ Line 335: / Line 365: @@
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27741 Entrez Genome Project]<br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444451&lvl=3&lin=f&keep=1&srchmode=1&unlock 444451]
 |-
 |
@@ Line 349: / Line 381: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27735 Entrez Genome Project]
 <br/> Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444447&lvl=3&lin=f&keep=1&srchmode=1&unlock 444447]
 |-
 |
@@ Line 363: / Line 397: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27749 Entrez Genome Project]<br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478004&lvl=3&lin=f&keep=1&srchmode=1&unlock 478004]
 |-
 |
@@ Line 377: / Line 413: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27751 Entrez Genome Project]<br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478005&lvl=3&lin=f&keep=1&srchmode=1&unlock 478005]
 |-
 |
@@ Line 391: / Line 429: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27753 Entrez Genome Project]<br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478006&lvl=3&lin=f&keep=1&srchmode=1&unlock 478006]
 |-
 |
@@ Line 405: / Line 445: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27755 Entrez Genome Project]<br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478007&lvl=3&lin=f&keep=1&srchmode=1&unlock 478007]
 |-
 |
 ''E. coli'' O157:H7 TW14359
 |
-in progress
+complete
 |
+[http://www.ncbi.nlm.nih.gov/nuccore/NC_013008 NC_013008]
 |
 no
 |
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30045 Entrez Genome Project]<br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=544404&lvl=3&lin=f&keep=1&srchmode=1&unlock 544404]
 |-
 |
@@ Line 431: / Line 475: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27757 Entrez Genome Project]<br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478008&lvl=3&lin=f&keep=1&srchmode=1&unlock 478008]
 |-
 |
@@ Line 444: / Line 490: @@
 [http://www.medicalbiofilm.org/genomes MBRI]<br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=32275 Entrez Genome Project]<br/>
 Bovine isolate; does not express Shiga toxin.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=570506&lvl=3&lin=f&keep=1&srchmode=1&unlock 570506]
 |-
 |
@@ Line 458: / Line 506: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=28847 Entrez Genome Project]<br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=502346&lvl=3&lin=f&keep=1&srchmode=1&unlock 502346]
 |-
 |
@@ Line 470: / Line 520: @@
 |
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=search&term=txid410290%5Borgn%5D Entrez Genome Project] <br/>
 Enterohemorrhagic bovine isolate.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=410290&lvl=3&lin=f&keep=1&srchmode=1&unlock 410290]
 |-
 |
@@ Line 481: / Line 533: @@
 no
 |
-[[PMID:11258796]]<ref name=PMID:11258796/>
+PMID:11258796
 <br/>
 This strain is also referred to as ''E. coli'' O157:H7 Sakai
 <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=226 Entrez Genome Project]<br/>
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83334&lvl=3&lin=f&keep=1&srchmode=1&unlock 83334]
 |-
 |
@@ Line 497: / Line 551: @@
 no
 |
-[[PMID:17293413]]<ref name=PMID:17293413/>
+PMID:17293413
 <br/>
 [http://ecoli.cvm.iastate.edu/display/NolanLab/APEC+O1+genome Nolan Lab Bacterial Pathogenesis Laboratory]<br/>
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16718 Entrez Genome Project]<br/>
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=405955 405955]
 |-
 |
@@ Line 512: / Line 568: @@
 no
 |
-[[PMID:16585510]]<ref name=PMID:16585510/>
+PMID:16585510
 <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16259 Entrez Genome Project]
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=364106 364106]
 |-
 |
 ''E. coli'' 042
 |
-in progress
+complete
 |
+[http://www.ncbi.nlm.nih.gov/nuccore/FN554766 FN554766]
 |
 no
@@ Line 528: / Line 586: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)]
 <br/>[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=340 Entrez Genome Project]<br/>
 Enteroaggregative.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=216592&lvl=3&lin=f&keep=1&srchmode=1&unlock 216592]
 |-
 |
@@ Line 539: / Line 599: @@
 no
 |
-[[PMID:16879640]]<ref name=PMID:16879640/>
+PMID:16879640
 <br/>
 [http://www.g2l.bio.uni-goettingen.de/projects/c_proj_ec.html University of Gottingen]
@@ Line 545: / Line 605: @@
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16235 Entrez Genome Project]<br/>
 Uropathogenic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=362663 362663]
 |-
 |
@@ Line 556: / Line 618: @@
 no
 |
-[[PMID:16988236]]<ref name=PMID:16988236/>
+PMID:16988236
 <br/>
 [http://www.genome.wisc.edu/sequencing/rs218.htm University of Wisconsin Genome Center]<br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=19411 Entrez Genome Project]
 <br/>
 ''E. coli'' K1; Neonatal meningitis ''E. coli'' (NMEC).
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=439184&lvl=3&lin=f&keep=1&srchmode=1&unlock 439184]
 |-
 |
@@ Line 572: / Line 636: @@
 no
 |
-[[PMID:12471157]]<ref name=PMID:12471157/>
+PMID:12471157
 <br/>
 [http://www.genome.wisc.edu/sequencing/upec.htm University of Wisconsin Genome Center]<br/>
 [http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=313 Entrez Genome Project] <br/>
 Uropathogenic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=199310 199310]
 |-
 |
-''E. coli'' [[ATCC 8739]]
+[[ATCC_8739|''E. coli'' ATCC 8739]]
 |
 complete
@@ Line 593: / Line 659: @@
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18083 Entrez Genome Project]<br/>
-|-
-|
-''E. coli'' E2348/69
-|
-complete
-|
 |
-no
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=481805 481805]
-|
-[http://www.sanger.ac.uk/Projects/Escherichia_Shigella/ Sanger Institute]<br/>
-[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
-[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=341 Entrez Genome Project]<br/>
-Enteropathogenic.
 |-
 |
@@ Line 619: / Line 673: @@
 |
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=28061 Entrez Genome Project]<br/>
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=488477&lvl=3&lin=f&keep=1&srchmode=1&unlock 488477]
 |-
 |
@@ Line 630: / Line 686: @@
 no
 |
 [http://www.g2l.bio.uni-goettingen.de/projects/f_projects.html Gottingen Genomics Laboratory]
+|
 |-
 |
-''E. coli'' LW1655F+
+''E. coli'' K-12 LW1655F+
 |
 in progress
@@ Line 642: / Line 700: @@
 |
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=29609 Entrez Genome Project]<br/>
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=527799&lvl=3&lin=f&keep=1&srchmode=1&unlock 527799]
 |-
 |
@@ Line 655: / Line 713: @@
 |
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=29837 Entrez Genome Project]<br/>
 Cell wall-less L-form derivative of ''E. coli'' K-12.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=531853&lvl=3&lin=f&keep=1&srchmode=1&unlock 531853]
 |-
 |
@@ Line 668: / Line 728: @@
 [http://www.ericbrc.org/portal/eric/escherichiaGenomeDetail Enteropathogen Resource Integration Center (ERIC)] <br/>
 Enterohemorrhagic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=155864 155864]
 |-
 |
@@ Line 680: / Line 742: @@
 |
 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18057 Entrez Genome Project]<br/>
 Human commensal isolate.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=409438 409438]
 |-
 |
-''E. coli'' 078:H11 H10407
+''E. coli'' W
+|
+in progress
+|
+|
+no
+|
+[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=31105 Entrez Genome Project]<br/>
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=566546&lvl=3&lin=f&keep=1&srchmode=1&unlock 566546]
+|-
+|
+''E. coli'' c7122
+|
+in progress
+|
+|
+no
+|
+[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20733 Entrez Genome Project]<br/>
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=475609&lvl=3&lin=f&keep=1&srchmode=1&unlock 475609]
+|-
+|
+<i>E. coli</i> S88
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=23515 NC_011742]
+|
+no
+|
+[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html GenoScope]
+Serotype O45:K1 strain, isolated from a case of meningitis.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585035 585035]
+|-
+|
+<i>E. coli</i> ED1a
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=23518 NC_011745]
+|
+no
+|
+[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html GenoScope]
+Avirulent serogroup O81.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585397 585397]
+|-
+|
+<i>E. coli</i> IAI1
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=23514 NC_011741]
+|
+no
+|
+[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html GenoScope]
+Serogroup O8.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585034 585034]
+|-
+|
+<i>E. coli</i> IAI39
 |
 complete
 |
+[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=23523 NC_011750]
+|
+no
+|
+[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html Genoscope]
+Serotype O7:K1.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585057 585057]
+|-
+|
+''E. coli'' 55989
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/nuccore/NC_011748 NC_011748]
 |
 no
 |
-[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
+PMID:19165319
-[http://www.sanger.ac.uk/Projects/Escherichia_Shigella/ Sanger Institute]<br/>
-Enterohemorrhagic.
+Pathogenic strain.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585055 585055]
+|-
+|
+[[BW2952|''E. coli'' BW2952 MC4100(MuLac)]]
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/nuccore/NC_012759 NC_012759]
+|
+yes
+|
+PMID:19376874
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=595496&lvl=3&lin=f&keep=1&srchmode=1&unlock 595496]
 |-
 |
-''E. coli'' W
+''E.coli'' UMN026
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/nuccore/NC_011751 NC_011751]
 |
-in progress
+no
 |
+PMID:19165319
+Pathogenic strain serotype O17:K52:H18
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585056 585056]
+|-
+|
+''E.coli'' O103:H2 str. 12009
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/nuccore/NC_013353 NC_013353]
 |
 no
 |
-[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=31105 Entrez Genome Project]<br/>
+PMID:19815525
+Pathogenic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=585395&lvl=3&lin=f&keep=1&srchmode=1&unlock 585395]
 |-
 |
-''E. coli'' c7122
+''E.coli'' O111:H- str. 11128
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/nuccore/NC_013364 NC_013364]
 |
-in progress
+no
 |
+PMID:19815525
+Pathogenic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=585396&lvl=3&lin=f&keep=1&srchmode=1&unlock 585396]
+|-
+|
+''E. coli'' O127:H6 str. E2348/69
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/nuccore/NC_011601 NC_011601]
 |
 no
 |
-[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20733 Entrez Genome Project]<br/>
+PMID:18952797
+Pathogenic.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=574521 574521]
+|-
+|
+[[DH1|''E. coli'' K-12 DH1]]
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/nuccore/CP001637 CP001637]
+|
+not yet
+|
+Escherichia coli K12 DH1, ATCC 33849
+|
+|-
+|
+''E. coli'' O55:H7 CB9615
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/nuccore/NC_013941 NC_013941]
+|
+no
+|
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=701177&lvl=3&lin=f&keep=1&srchmode=1&unlock 701177]
+|-
+|
+''E. coli'' O26:H11 str. 11368
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/nuccore/NC_013361 NC_013361]
+|
+no
+|
+enteropathogenic strain, serovar = O26:H11
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=573235&lvl=3&lin=f&keep=1&srchmode=1&unlock 573235]
+|-
+|
+''E. coli'' IHE3034
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/nuccore/CP001969 CP001969]
+|
+no
+|
+Extraintestinal Pathogenic
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=714962&lvl=3&lin=f&keep=1&srchmode=1&unlock 714962]
+|-
+|
+''E. coli'' SE15
+|
+complete
+|
+[http://www.ncbi.nlm.nih.gov/nuccore/AP009378 AP009378]]
+|
+no
+|
+Commensal strain.
+|
+[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=431946&lvl=3&lin=f&keep=1&srchmode=1&unlock 431946]
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149034.P4919ed888b288&page=149034&pagename={{FULLPAGENAMEE}}&type=0&template=Sequenced_strains edit table] || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149034.P4919ed888b288&page=149034&pagename={{FULLPAGENAMEE}}&type=0&template=Sequenced_strains edit table]</span> || || || || ||
 |}
 <!--box uid=63ce1649aab8b3180235b0af7618f667.149034.P4919ed888b288--></protect>
 <references/>

Sequenced E. coli Genomes: Difference between revisions

Latest revision as of 22:09, 27 July 2010

Navigation menu

Search