Sequenced E. coli Genomes: Difference between revisions

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'''EcoliWiki plans to create gene lists for all available laboratory ''E. coli'' K-12, B, and C strains.  Although the pathogenic strains of ''E. coli'' will not be put into EcoliWiki, numerous strains of ''E. coli'', non-pathogenic or pathogenic, have been sequenced or the projects are in progress.  Use this table to track which genomes are available and where they are available from.  Please add any strains you know are being sequenced or are finished.'''
[[:Category:E._coli_genomes|Go to the ''E. coli'' Gene Lists in EcoliWiki]]
 
EcoliWiki plans to create gene lists for all available laboratory ''E. coli'' K-12, B, and C strains.  Although pathogenic strains of ''E. coli'' are not the focus of EcoliWiki, numerous strains of ''E. coli'', non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so.  Use this table to track which genomes are available and from where.  Please add or edit any strains you know are being sequenced or are finished.


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{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="P4919ed888b288" class=" tableEdit Sequenced_strains"   
|- {{TableHeadingColor}}
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!|Strain!!Sequencing status!!Accessions (if applicable)!!In EcoliWiki!!Comments
!|Strain!!Sequencing status!!Accessions (if applicable)!!In EcoliWiki!!Comments!!Taxon ID
|-  
|-  
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Line 21: Line 23:
yes
yes
|
|
[[PMID:9278503]]<ref name=PMID:9278503/>
PMID:9278503
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=511145 511145]
|-  
|-  
|
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yes
yes
|
|
[[PMID:16738553]]<ref name=PMID:16738553/>
PMID:16738553
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=316407 316407]
|-  
|-  
|
|
Line 40: Line 46:
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|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_010473 NC_010473]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_010473 NC_010473]
|
yes
|
PMID:18245285
This genome has now been incorporated into EcoliWiki.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=316385 316385]
|-
|
[[REL606]]
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_012967 NC_012967]
|
yes
|
Information about the genes of this E. coli B strain is now available from EcoliWiki
[http://www.gem.re.kr/ International E. coli B Consortium]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18281 Entrez Genome Project] <br/>
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=413997 413997]
|-
|
[[BL21(DE3)|''E. coli'' BL21 (DE3)]]
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/CP001509.3 CP001509.3] & [http://www.ncbi.nlm.nih.gov/nuccore/NC_012947.1 NC_012947.1] & [http://www.ncbi.nlm.nih.gov/nuccore/CP001665.1 CP001665.1]
|
not yet
|
We are working on adding this strain to EcoliWiki. <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 DOE Joint Genome Institute]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 Entrez Genome Project] <br/>
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=469008 469008]
|-
|
''E. coli'' 101-1
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_AAMK00000000 Whole Genome Shotgun Sequence 101-1]
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_101_1/index.shtml JCVI]
<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16193 Entrez Genome Project] <br/>
Enteroaggregative.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=358709&lvl=3&lin=f&keep=1&srchmode=1&unlock 358709]
|-
|
''E. coli'' 53638
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_AAKB00000000 Whole Genome Shotgun Sequence 53638]
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_53638/index.shtml  JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15639 Entrez Genome Project]<br/>
Enteroinvasive.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=344610&lvl=3&lin=f&keep=1&srchmode=1&unlock 344610]
|-
|
''E. coli'' B171
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_AAJX00000000 Whole Genome Shotgun Sequence B171]
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b171/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15630 Entrez Genome Project]<br/>
Enteropathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=344601&lvl=3&lin=f&keep=1&srchmode=1&unlock 344601]
|-
|
''E. coli'' B7A
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_AAJT00000000 Whole Genome Shotgun Sequence B7A]
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b7a/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15572 Entrez Genome Project] <br/>
Enterotoxigenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340184&lvl=3&lin=f&keep=1&srchmode=1&unlock 340184]
|-
|
''E. coli'' E110019
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_AAJW00000000 Whole Genome Shotgun Sequence E110019]
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e110019/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15578 Entrez Genome Project]<br/>
Atypical enteropathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340186&lvl=3&lin=f&keep=1&srchmode=1&unlock 340186]
|-
|
''E. coli'' E22
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_AAJV00000000 Whole Genome Shotgun Sequence E22]
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e22/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15577 Entrez Genome Project]<br/>
Enteropathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340185&lvl=3&lin=f&keep=1&srchmode=1&unlock 340185]
|-
|
''E. coli'' E24377A
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_009801 NC_009801]
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e24377a/index.shtml  JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13960 Entrez Genome Project]<br/>
Enterotoxigenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=331111 331111]
|-
|
''E. coli'' F11
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_AAJU00000000 Whole Genome Shotgun Sequence F11]
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_f11/index.shtml  JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15576 Entrez Genome Project]<br/>
Extra-intestinal pathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340197&lvl=3&lin=f&keep=1&srchmode=1&unlock 340197]
|-
|
''E. coli'' HS
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_009800 NC_009800]
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_hs/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13959 Entrez Genome Project]<br/>
Human commensal isolate.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=331112&lvl=3&lin=f&keep=1&srchmode=1&unlock 331112]
|-
|
''E. coli'' SMS-3-5
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_010498 NC_010498]
|
no
|
PMID:18708504
<br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_secec_sms_3_5/index.shtml SECEC SMS-3-5 at JCVI] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=19469 Entrez Genome Project] <br/>
Highly antibiotic resistant, including ciprofloxacin & moxifloxacin.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=439855 439855]
|-
|
''E. coli'' O157:H7 EC4024
|
in progress
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=5906 Whole Genome Shotgun Sequence EC4024]
|
no
|
[http://msc.jcvi.org/o157h7/ec4024/index.shtml  JCVI]  <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27747 Entrez Genome Project] <br/>
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444454&lvl=3&lin=f&keep=1&srchmode=1&unlock 444454]
|-
|
''E. coli'' O157:H7 EC4042
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHM00000000 Whole Genome Shotgun Sequence EC4042]
|
no
|
[http://msc.jcvi.org/o157h7/ec4042/index.shtml  JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27737 Entrez Genome Project] <br/>
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444449&lvl=3&lin=f&keep=1&srchmode=1&unlock 444449]
|-
|
''E. coli'' O157:H7 EC4045
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHL00000000 Whole Genome Shotgun Sequence EC4045]
|
no
|
[http://msc.jcvi.org/o157h7/ec4045/index.shtml  JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27733 Entrez Genome Project] <br/>
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444448&lvl=3&lin=f&keep=1&srchmode=1&unlock 444448]
|-
|
''E. coli'' O157:H7 EC4076
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHQ00000000 Whole Genome Shotgun Sequence EC4076]
|
|
no
no
|
|
[[PMID:18245285]]<ref name=PMID:18245285/>
[http://msc.jcvi.org/o157h7/ec4076/index.shtml  JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27745 Entrez Genome Project]<br/>
Enterohemorrhagic.


This genome will be loaded as soon as possible -
|
Nov 11, 2008
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444453&lvl=3&lin=f&keep=1&srchmode=1&unlock 444453]
|-  
|-  
|
|
''Escherichia coli'' (B) REL606
''E. coli'' O157:H7 EC4113
|
|
in progress
in progress
|
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHP00000000 Whole Genome Shotgun Sequence EC4113]
|
no
|
[http://msc.jcvi.org/o157h7/ec4113/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27743 Entrez Genome Project]<br/>
Enterohemorrhagic.


|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444452&lvl=3&lin=f&keep=1&srchmode=1&unlock 444452]
|-
|
''E. coli'' O157:H7 EC4115
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_011353  NC_011353]
|
|
no
no
|
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18281 E. coli Genome Projects] <br/>
[http://msc.jcvi.org/o157h7/ec4115/index.shtml  JCVI]<br/>
Will be included in EcoliWiki when made publically available.  
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27739 Entrez Genome Project]
<br/>Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=444450 444450]
|-  
|-  
|
|
''E. coli'' BL21 (DE3)
''E. coli'' O157:H7 EC4196
|
|
in progress
in progress
|
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHO00000000 Whole Genome Shotgun Sequence EC4196]
|
no
|
[http://msc.jcvi.org/o157h7/ec4196/index.shtml JCVI ]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27741 Entrez Genome Project]<br/>
Enterohemorrhagic.


|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444451&lvl=3&lin=f&keep=1&srchmode=1&unlock 444451]
|-
|
''E. coli'' O157:H7 EC4206
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHK00000000 Whole Genome Shotgun Sequence EC4206]
|
no
|
[http://msc.jcvi.org/o157h7/ec4206/index.shtml  JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27735 Entrez Genome Project]
<br/> Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444447&lvl=3&lin=f&keep=1&srchmode=1&unlock 444447]
|-
|
''E. coli'' O157:H7 EC4401
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHR00000000 Whole Genome Shotgun Sequence EC4401]
|
|
no
no
|
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 DOE Joint Genome Institute]<br/>
[http://msc.jcvi.org/o157h7/ec4401/index.shtml JCVI] <br/>
Will be included in EcoliWiki when publically available.  
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27749 Entrez Genome Project]<br/>
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478004&lvl=3&lin=f&keep=1&srchmode=1&unlock 478004]
|-
|
''E. coli'' O157:H7 EC4486
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHS00000000 Whole Genome Shotgun Sequence EC4486]
|
no
|
[http://msc.jcvi.org/o157h7/ec4486/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27751 Entrez Genome Project]<br/>
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478005&lvl=3&lin=f&keep=1&srchmode=1&unlock 478005]
|-
|
''E. coli'' O157:H7 EC4501
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHT00000000 Whole Genome Shotgun Sequence EC4501]
|
no
|
[http://msc.jcvi.org/o157h7/ec4501/index.shtml  JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27753 Entrez Genome Project]<br/>
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478006&lvl=3&lin=f&keep=1&srchmode=1&unlock 478006]
|-
|
''E. coli'' O157:H7 EC508
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHW00000000 Whole Genome Shotgun Sequence EC508]
|
no
|
[http://msc.jcvi.org/o157h7/ec508/index.shtml  JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27755 Entrez Genome Project]<br/>
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478007&lvl=3&lin=f&keep=1&srchmode=1&unlock 478007]
|-
|
''E. coli'' O157:H7 TW14359
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_013008 NC_013008]
|
no
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30045 Entrez Genome Project]<br/>
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=544404&lvl=3&lin=f&keep=1&srchmode=1&unlock 544404]
|-
|
''E. coli'' O157:H7 EC869
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHU00000000 Whole Genome Shotgun Sequence EC869]
|
no
|
[http://msc.jcvi.org/o157h7/ec869/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27757 Entrez Genome Project]<br/>
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478008&lvl=3&lin=f&keep=1&srchmode=1&unlock 478008]
|-
|
''E. coli'' O157:H7 FRIK966
|
in progress
|
 
|
no
|
[http://www.medicalbiofilm.org/genomes MBRI]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=32275 Entrez Genome Project]<br/>
Bovine isolate; does not express Shiga toxin.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=570506&lvl=3&lin=f&keep=1&srchmode=1&unlock 570506]
|-
|
''E. coli'' O157:H7 TW14588
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABKY00000000 Whole Genome Shotgun Sequence TW14588]
|
no
|
[http://msc.jcvi.org/o157h7/tw14588/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=28847 Entrez Genome Project]<br/>
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=502346&lvl=3&lin=f&keep=1&srchmode=1&unlock 502346]
|-
|
''E. coli'' O157:H7 GZ-021210/cattle
|
in progress
|
 
|
no
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=search&term=txid410290%5Borgn%5D Entrez Genome Project] <br/>
Enterohemorrhagic bovine isolate.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=410290&lvl=3&lin=f&keep=1&srchmode=1&unlock 410290]
|-
|
''E. coli'' O157:H7
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_002695 NC_002695]
|
no
|
PMID:11258796
<br/>
This strain is also referred to as ''E. coli'' O157:H7 Sakai
<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=226 Entrez Genome Project]<br/>
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83334&lvl=3&lin=f&keep=1&srchmode=1&unlock 83334]
|-
|
''E. coli'' APEC O1
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008563 NC_008563]
|
no
|
PMID:17293413
<br/>
[http://ecoli.cvm.iastate.edu/display/NolanLab/APEC+O1+genome Nolan Lab Bacterial Pathogenesis Laboratory]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16718 Entrez Genome Project]<br/>
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=405955 405955]
|-
|
''E. coli'' UTI89
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_007946 NC_007946]
|
no
|
PMID:16585510
<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16259 Entrez Genome Project]
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=364106 364106]
|-
|
''E. coli'' 042
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/FN554766 FN554766]
|
no
|
[http://www.sanger.ac.uk/Projects/Escherichia_Shigella/ Sanger Institute] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)]
<br/>[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=340 Entrez Genome Project]<br/>
Enteroaggregative.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=216592&lvl=3&lin=f&keep=1&srchmode=1&unlock 216592]
|-
|
''E. coli'' 536
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008253 NC_008253]
|
no
|
PMID:16879640
<br/>
[http://www.g2l.bio.uni-goettingen.de/projects/c_proj_ec.html University of Gottingen]
<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16235 Entrez Genome Project]<br/>
Uropathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=362663 362663]
|-  
|-  
|
|
''E. coli'' BL21(DE3)
''E. coli'' RS218
|
|
in progress
in progress
Line 81: Line 618:
no
no
|
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20713 Korea Research Institute of Bioscience and Biotechnology] <br/>
PMID:16988236
Will be included in EcoliWiki when publically available.  
<br/>
[http://www.genome.wisc.edu/sequencing/rs218.htm University of Wisconsin Genome Center]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=19411 Entrez Genome Project]
<br/>
''E. coli'' K1; Neonatal meningitis ''E. coli'' (NMEC).
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=439184&lvl=3&lin=f&keep=1&srchmode=1&unlock 439184]
|-
|
''E. coli'' CFT073
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_004431 NC_004431]
|
no
|
PMID:12471157
<br/>
[http://www.genome.wisc.edu/sequencing/upec.htm University of Wisconsin Genome Center]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=313 Entrez Genome Project] <br/>
Uropathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=199310 199310]
|-
|
[[ATCC_8739|''E. coli'' ATCC 8739]]
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_010468 NC_010468]
|
not yet
|
''E. coli'' Crooks strain (sometimes misnamed as ''E. coli'' B strain (see page for [http://ecoliwiki.net/colipedia/index.php/ATCC_8739 ATCC 8739])<br/>
[http://genome.ornl.gov/microbial/ecol_c/ Joint Genome Institute]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18083 Entrez Genome Project]<br/>
 
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=481805 481805]
|-  
|-  
|
|
''E. coli'' 101-1
''E. coli'' F18+
|
|
in progress
in progress
Line 93: Line 672:
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_101_1/index.shtml E. coli 101-1 from JCVI] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=28061 Entrez Genome Project]<br/>


Pathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=488477&lvl=3&lin=f&keep=1&srchmode=1&unlock 488477]
|-
|
''E. coli'' 789 A/C 1
|
in progress
|


|
no
|
[http://www.g2l.bio.uni-goettingen.de/projects/f_projects.html Gottingen Genomics Laboratory]
|
   
   
|-  
|-  
|
|
''E. coli'' 53638
''E. coli'' K-12 LW1655F+
|
in progress
|
 
|
no
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=29609 Entrez Genome Project]<br/>
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=527799&lvl=3&lin=f&keep=1&srchmode=1&unlock 527799]
|-
|
''E. coli'' NC-7
|
in progress
|
 
|
not yet
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=29837 Entrez Genome Project]<br/>
Cell wall-less L-form derivative of ''E. coli'' K-12.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=531853&lvl=3&lin=f&keep=1&srchmode=1&unlock 531853]
|-
|
''E. coli'' O157:H7 EDL933
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NC_002655.2 NC_002655.2]
|
no
|
[http://www.ericbrc.org/portal/eric/escherichiaGenomeDetail Enteropathogen Resource Integration Center (ERIC)] <br/>
 
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=155864 155864]
|-
|
''E. coli'' SE11
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_011415 NC_011415]
|
no
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18057 Entrez Genome Project]<br/>
Human commensal isolate.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=409438 409438]
|-
|
''E. coli'' W
|
|
in progress
in progress
Line 108: Line 755:
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_53638/index.shtml 53638 at JCVI]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=31105 Entrez Genome Project]<br/>
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=566546&lvl=3&lin=f&keep=1&srchmode=1&unlock 566546]
|-
|
''E. coli'' c7122
|
in progress
|


Pathogenic.  
|
no
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20733 Entrez Genome Project]<br/>
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=475609&lvl=3&lin=f&keep=1&srchmode=1&unlock 475609]
|-
|
<i>E. coli</i> S88
|
complete
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=23515 NC_011742]
|
no
|
[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html GenoScope]
 
Serotype O45:K1 strain, isolated from a case of meningitis.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585035 585035]
|-
|
<i>E. coli</i> ED1a
|
complete
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=23518 NC_011745]
|
no
|
[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html GenoScope]
 
Avirulent serogroup O81.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585397 585397]
|-
|
<i>E. coli</i> IAI1
|
complete
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=23514 NC_011741]
|
no
|
[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html GenoScope]
 
Serogroup O8.
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585034 585034]
|-
|
<i>E. coli</i> IAI39
|
complete
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=23523 NC_011750]
|
no
|
[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html Genoscope]
 
Serotype O7:K1.
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585057 585057]
|-
|
''E. coli'' 55989
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_011748 NC_011748]
|
no
|
PMID:19165319
 
Pathogenic strain.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585055 585055]
|-
|
[[BW2952|''E. coli'' BW2952 MC4100(MuLac)]]
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_012759 NC_012759]
|
yes
|
PMID:19376874
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=595496&lvl=3&lin=f&keep=1&srchmode=1&unlock 595496]
|-
|
''E.coli'' UMN026
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_011751 NC_011751]
|
no
|
PMID:19165319
 
Pathogenic strain serotype O17:K52:H18
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585056 585056]
|-
|
''E.coli'' O103:H2 str. 12009
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_013353 NC_013353]
|
no
|
PMID:19815525
 
Pathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=585395&lvl=3&lin=f&keep=1&srchmode=1&unlock 585395]
|-
|
''E.coli'' O111:H- str. 11128
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_013364 NC_013364]
|
no
|
PMID:19815525
 
Pathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=585396&lvl=3&lin=f&keep=1&srchmode=1&unlock 585396]
|-
|
''E. coli'' O127:H6 str. E2348/69
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_011601 NC_011601]
|
no
|
PMID:18952797
 
Pathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=574521 574521]
|-
|
[[DH1|''E. coli'' K-12 DH1]]
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/CP001637 CP001637]
|
not yet
|
Escherichia coli K12 DH1, ATCC 33849
|
|-
|
''E. coli'' O55:H7 CB9615
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_013941 NC_013941]
|
no
|
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=701177&lvl=3&lin=f&keep=1&srchmode=1&unlock 701177]
|-
|
''E. coli'' O26:H11 str. 11368
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_013361 NC_013361]
|
no
|
enteropathogenic strain, serovar = O26:H11
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=573235&lvl=3&lin=f&keep=1&srchmode=1&unlock 573235]
|-
|
''E. coli'' IHE3034
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/CP001969 CP001969]
|
no
|
Extraintestinal Pathogenic
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=714962&lvl=3&lin=f&keep=1&srchmode=1&unlock 714962]
|-
|
''E. coli'' SE15
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/AP009378 AP009378]]
|
no
|
Commensal strain.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=431946&lvl=3&lin=f&keep=1&srchmode=1&unlock 431946]


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<references/>

Latest revision as of 22:09, 27 July 2010

Go to the E. coli Gene Lists in EcoliWiki

EcoliWiki plans to create gene lists for all available laboratory E. coli K-12, B, and C strains. Although pathogenic strains of E. coli are not the focus of EcoliWiki, numerous strains of E. coli, non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so. Use this table to track which genomes are available and from where. Please add or edit any strains you know are being sequenced or are finished.

Strain Sequencing status Accessions (if applicable) In EcoliWiki Comments Taxon ID

MG1655

complete

NC_000913

yes

PMID:9278503[1]

511145

W3110

complete

AC_000091

yes

PMID:16738553[2]

316407

DH10B

complete

NC_010473

yes

PMID:18245285[3]

This genome has now been incorporated into EcoliWiki.

316385

REL606

complete

NC_012967

yes

Information about the genes of this E. coli B strain is now available from EcoliWiki International E. coli B Consortium
Entrez Genome Project

413997

E. coli BL21 (DE3)

complete

CP001509.3 & NC_012947.1 & CP001665.1

not yet

We are working on adding this strain to EcoliWiki.
DOE Joint Genome Institute
Entrez Genome Project

469008

E. coli 101-1

in progress

Whole Genome Shotgun Sequence 101-1

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project

Enteroaggregative.

358709

E. coli 53638

in progress

Whole Genome Shotgun Sequence 53638

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteroinvasive.

344610

E. coli B171

in progress

Whole Genome Shotgun Sequence B171

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteropathogenic.

344601

E. coli B7A

in progress

Whole Genome Shotgun Sequence B7A

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterotoxigenic.

340184

E. coli E110019

in progress

Whole Genome Shotgun Sequence E110019

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project

Atypical enteropathogenic.

340186

E. coli E22

in progress

Whole Genome Shotgun Sequence E22

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteropathogenic.

340185

E. coli E24377A

complete

NC_009801

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterotoxigenic.

331111

E. coli F11

in progress

Whole Genome Shotgun Sequence F11

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Extra-intestinal pathogenic.

340197

E. coli HS

complete

NC_009800

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Human commensal isolate.

331112

E. coli SMS-3-5

complete

NC_010498

no

PMID:18708504[4]
SECEC SMS-3-5 at JCVI
Entrez Genome Project
Highly antibiotic resistant, including ciprofloxacin & moxifloxacin.

439855

E. coli O157:H7 EC4024

in progress

Whole Genome Shotgun Sequence EC4024

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444454

E. coli O157:H7 EC4042

in progress

Whole Genome Shotgun Sequence EC4042

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.


444449

E. coli O157:H7 EC4045

in progress

Whole Genome Shotgun Sequence EC4045

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444448

E. coli O157:H7 EC4076

in progress

Whole Genome Shotgun Sequence EC4076

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444453

E. coli O157:H7 EC4113

in progress

Whole Genome Shotgun Sequence EC4113

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444452

E. coli O157:H7 EC4115

complete

NC_011353

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444450

E. coli O157:H7 EC4196

in progress

Whole Genome Shotgun Sequence EC4196

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444451

E. coli O157:H7 EC4206

in progress

Whole Genome Shotgun Sequence EC4206

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444447

E. coli O157:H7 EC4401

in progress

Whole Genome Shotgun Sequence EC4401

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

478004

E. coli O157:H7 EC4486

in progress

Whole Genome Shotgun Sequence EC4486

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

478005

E. coli O157:H7 EC4501

in progress

Whole Genome Shotgun Sequence EC4501

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

478006

E. coli O157:H7 EC508

in progress

Whole Genome Shotgun Sequence EC508

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

478007

E. coli O157:H7 TW14359

complete

NC_013008

no

Entrez Genome Project
Enterohemorrhagic.

544404

E. coli O157:H7 EC869

in progress

Whole Genome Shotgun Sequence EC869

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

478008

E. coli O157:H7 FRIK966

in progress

no

MBRI
Entrez Genome Project
Bovine isolate; does not express Shiga toxin.

570506

E. coli O157:H7 TW14588

in progress

Whole Genome Shotgun Sequence TW14588

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

502346

E. coli O157:H7 GZ-021210/cattle

in progress

no

Entrez Genome Project
Enterohemorrhagic bovine isolate.

410290

E. coli O157:H7

complete

NC_002695

no

PMID:11258796[5]
This strain is also referred to as E. coli O157:H7 Sakai
Entrez Genome Project

83334

E. coli APEC O1

complete

NC_008563

no

PMID:17293413[6]
Nolan Lab Bacterial Pathogenesis Laboratory
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project

405955

E. coli UTI89

complete

NC_007946

no

PMID:16585510[7]
Entrez Genome Project

364106

E. coli 042

complete

FN554766

no

Sanger Institute
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteroaggregative.

216592

E. coli 536

complete

NC_008253

no

PMID:16879640[8]
University of Gottingen
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Uropathogenic.

362663

E. coli RS218

in progress

no

PMID:16988236[9]
University of Wisconsin Genome Center
Entrez Genome Project
E. coli K1; Neonatal meningitis E. coli (NMEC).

439184

E. coli CFT073

complete

NC_004431

no

PMID:12471157[10]
University of Wisconsin Genome Center
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Uropathogenic.

199310

E. coli ATCC 8739

complete

NC_010468

not yet

E. coli Crooks strain (sometimes misnamed as E. coli B strain (see page for ATCC 8739)
Joint Genome Institute
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project

481805

E. coli F18+

in progress

no

Entrez Genome Project

488477

E. coli 789 A/C 1

in progress

no

Gottingen Genomics Laboratory

E. coli K-12 LW1655F+

in progress

no

Entrez Genome Project

527799

E. coli NC-7

in progress

not yet

Entrez Genome Project
Cell wall-less L-form derivative of E. coli K-12.

531853

E. coli O157:H7 EDL933

complete

NC_002655.2

no

Enteropathogen Resource Integration Center (ERIC)

Enterohemorrhagic.

155864

E. coli SE11

complete

NC_011415

no

Entrez Genome Project
Human commensal isolate.

409438

E. coli W

in progress

no

Entrez Genome Project

566546

E. coli c7122

in progress

no

Entrez Genome Project

475609

E. coli S88

complete

NC_011742

no

GenoScope

Serotype O45:K1 strain, isolated from a case of meningitis.

585035

E. coli ED1a

complete

NC_011745

no

GenoScope

Avirulent serogroup O81.

585397

E. coli IAI1

complete

NC_011741

no

GenoScope

Serogroup O8.

585034

E. coli IAI39

complete

NC_011750

no

Genoscope

Serotype O7:K1.

585057

E. coli 55989

complete

NC_011748

no

PMID:19165319[11]

Pathogenic strain.

585055

E. coli BW2952 MC4100(MuLac)

complete

NC_012759

yes

PMID:19376874[12]

595496

E.coli UMN026

complete

NC_011751

no

PMID:19165319[11]

Pathogenic strain serotype O17:K52:H18

585056

E.coli O103:H2 str. 12009

complete

NC_013353

no

PMID:19815525[13]

Pathogenic.

585395

E.coli O111:H- str. 11128

complete

NC_013364

no

PMID:19815525[13]

Pathogenic.

585396

E. coli O127:H6 str. E2348/69

complete

NC_011601

no

PMID:18952797[14]

Pathogenic.

574521

E. coli K-12 DH1

complete

CP001637

not yet

Escherichia coli K12 DH1, ATCC 33849

E. coli O55:H7 CB9615

complete

NC_013941

no

701177

E. coli O26:H11 str. 11368

complete

NC_013361

no

enteropathogenic strain, serovar = O26:H11

573235

E. coli IHE3034

complete

CP001969

no

Extraintestinal Pathogenic

714962

E. coli SE15

complete

AP009378]

no

Commensal strain.

431946

edit table
  1. ↑ Blattner, FR et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277 1453-62 PubMed
  2. ↑ Hayashi, K et al. (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2 2006.0007 PubMed
  3. ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
  4. ↑ Fricke, WF et al. (2008) Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. J. Bacteriol. 190 6779-94 PubMed
  5. ↑ Hayashi, T et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8 11-22 PubMed
  6. ↑ Johnson, TJ et al. (2007) The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. J. Bacteriol. 189 3228-36 PubMed
  7. ↑ Chen, SL et al. (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc. Natl. Acad. Sci. U.S.A. 103 5977-82 PubMed
  8. ↑ Hochhut, B et al. (2006) Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536. Mol. Microbiol. 61 584-95 PubMed
  9. ↑ Teng, CH et al. (2006) Effects of ompA deletion on expression of type 1 fimbriae in Escherichia coli K1 strain RS218 and on the association of E. coli with human brain microvascular endothelial cells. Infect. Immun. 74 5609-16 PubMed
  10. ↑ Welch, RA et al. (2002) Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 99 17020-4 PubMed
  11. ↑ 11.0 11.1 Touchon, M et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 5 e1000344 PubMed
  12. ↑ Ferenci, T et al. (2009) Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. J. Bacteriol. 191 4025-9 PubMed
  13. ↑ 13.0 13.1 Ogura, Y et al. (2009) Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 106 17939-44 PubMed
  14. ↑ Iguchi, A et al. (2009) Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. J. Bacteriol. 191 347-54 PubMed
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