ytjB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YtjB

Synonyms

conserved protein [1], B4387 [2][1], YtjB [2][1], Smp [2][1] , ECK4379, JW4350, smp, b4387

Product description

membrane protein[2][3]

Function unknown, membrane protein; transcribed divergently from serB, overlapping promoters; homologous to ahpA of P. multocida, which induces anaerobic expression of the cryptic hemolysin HlyE(SheA) when cloned in E. coli[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

glyS

PMID:16606699[5]

Experiment(s):EBI-1147968

Protein

glgB

PMID:16606699[5]

Experiment(s):EBI-1147968

Protein

clpB

PMID:16606699[5]

Experiment(s):EBI-1147968

Protein

dnaB

PMID:16606699[5]

Experiment(s):EBI-1147968

Protein

rpmB

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MARTKLKFRL HRAVIVLFCL ALLVALMQGA SWFSQNHQRQ RNPQLEELAR TLARQVTLNV
APLMRTDSPD EKRIQAILDQ LTDESRILDA GVYDEQGDLI ARSGESVEVR DRLALDGKKA
GGYFNQQIVE PIAGKNGPLG YLRLTLDTHT LATEAQQVDN TTNILRLMLL LSLAIGVVLT
RTLLQGKRTR WQQSPFLLTA SKPVPEEEES EKKE
Length

214

Mol. Wt

24.083 kDa

pI

8.9 (calculated)

Extinction coefficient

15,470 - 15,595 (calc based on 3 Y, 2 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-30

UniProt Manual:Signal Peptides

UniProt:P0AGC7

Domain

1..210

PF10144 Bacterial virulence factor haemolysin

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ytjB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132204

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946089

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014387

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AGC7

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10951

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10951

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946089

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000940

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0944

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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