ytfQ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YtfQ

Synonyms

predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily[1], B4227[2][1], YtfQ[2][1] , ECK4223, JW4186, b4227

Product description

YtfQ[2][3];

Component of YtfQ/YtfR/YtfS/YtfT/YjfF ABC transporter[2][3]

Putative ABC transporter periplasmic binding protein; function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005534

galactose binding

PMID:19744923[5]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0015757

galactose transport

PMID:19744923[5]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of YtfQ/YtfR/YtfS/YtfT/YjfF ABC transporter

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Periplasm

PMID:9298646[6]

EchoLocation:ytfQ

periplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MWKRLLIVSA VSAAMSSMAL AAPLTVGFSQ VGSESGWRAA ETNVAKSEAE KRGITLKIAD
GQQKQENQIK AVRSFVAQGV DAIFIAPVVA TGWEPVLKEA KDAEIPVFLL DRSIDVKDKS
LYMTTVTADN ILEGKLIGDW LVKEVNGKPC NVVELQGTVG ASVAIDRKKG FAEAIKNAPN
IKIIRSQSGD FTRSKGKEVM ESFIKAENNG KNICMVYAHN DDMVIGAIQA IKEAGLKPGK
DILTGSIDGV PDIYKAMMDG EANASVELTP NMAGPAFDAL EKYKKDGTMP EKLTLTKSTL
YLPDTAKEEL EKKKNMGY
Length

318

Mol. Wt

34.345 kDa

pI

7.2 (calculated)

Extinction coefficient

30,940 - 31,190 (calc based on 6 Y, 4 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-21

UniProt Manual:Signal Peptides

UniProt:P39325

Domain

25..295

PF00532 family

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ytfQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132049

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948746

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013829

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39325

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12517

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12517

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948746

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002312

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2409

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Horler, RS et al. (2009) Furanose-specific sugar transport: characterization of a bacterial galactofuranose-binding protein. J. Biol. Chem. 284 31156-63 PubMed
  6. ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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