ypfG:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YpfG

Synonyms

predicted protein[1], B2466[2][1], YpfG[2][1] , ECK2461, JW2450, b2466

Product description

predicted protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

fliG

PMID:16606699[5]

Experiment(s):EBI-1142934
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRYRIFLLFF FALLPTSLVW AAPAQRAFSD WQVTCNNQNF CVARNTGDHN GLVMTLSRSA
GAHTDAVLRI ERGGLKSPEA SEGEIAPRLL LDGEPLALSG DKWRISPWLL VTDDTATITA
FLQMIQEGKA ITLRDGDQTI SLSGLKAALL FIDAQQKRVG SETAWIKKGD EPPLSVPPAP
ALKEVAVVNP TPTPLSLEER NDLLDYGNWR MNGLRCSLDP LRREVNVTAL TDDKALMMIS
CEAGAYNTID LAWIVSRKKP LASRPVRLRL PFNNGQETNE LELMNATFDE KSRELVTLAK
GRGLSDCGIQ ARWRFDGQRF RLVRYAAEPT CDNWHGPDAW PTLWITR
Length

347

Mol. Wt

38.747 kDa

pI

7.3 (calculated)

Extinction coefficient

66,460 - 67,210 (calc based on 4 Y, 11 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-21

UniProt Manual:Signal Peptides

UniProt:P76559

Domain

14..347

PF06674 Protein of unknown function (DUF1176)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ypfG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130391

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946828

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008120

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76559

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7295

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14194

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946828

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003868

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3946

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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