yodC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YodC

Synonyms

predicted protein[1], YodC[2][1], B1957[2][1] , ECK1955, JW1940, b1957

Product description

hypothetical protein[2]; predicted protein[3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

srmB

PMID:16606699[5]

Experiment(s):EBI-1141494

Protein

rplB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplN

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

adhE

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

pykA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

narH

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplM

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ibpA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

minD

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ffh

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

secA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

dnaJ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

lon

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

metK

PMID:19402753[6]

MALDI(Z-score):20.122381

Protein

intE

PMID:19402753[6]

LCMS(ID Probability):99.2

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSFMVSEEVT VKEGGPRMIV TGYSSGMVEC RWYDGYGVKR EAFHETELVP GEGSRSAEEV
Length

60

Mol. Wt

6.677 kDa

pI

4.5 (calculated)

Extinction coefficient

9,970 - 10,095 (calc based on 3 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

3..49

PF09926 Uncharacterized small protein (DUF2158)

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yodC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129903

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946466

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006498

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P64517

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7050

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14307

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946466

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003636

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4054

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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