yobB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YobB

Synonyms

conserved protein[1], B1843[2][1], YobB[2][1] , ECK1844, JW1832, b1843

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006807

nitrogen compound metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003010

P

Seeded from EcoCyc (v14.0)

complete

GO:0016810

hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003010

F

Seeded from EcoCyc (v14.0)

complete

GO:0003674

molecular function

n/a

ND: No biological Data available

F

Missing: reference

GO:0005575

cellular component

n/a

ND: No biological Data available

C

Missing: reference

GO:0008150

biological process

n/a

ND: No biological Data available

P

Missing: reference

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplD

PMID:16606699[5]

Experiment(s):EBI-1140972

Protein

phnL

PMID:16606699[5]

Experiment(s):EBI-1140972

Protein

hfq

PMID:16606699[5]

Experiment(s):EBI-1140972

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1140972

Protein

rpsM

PMID:16606699[5]

Experiment(s):EBI-1140972

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1140972

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1140972

Protein

phnN

PMID:16606699[5]

Experiment(s):EBI-1140972

Protein

rimJ

PMID:16606699[5]

Experiment(s):EBI-1140972

Protein

rplN

PMID:16606699[5]

Experiment(s):EBI-1140972

Protein

pyrF

PMID:16606699[5]

Experiment(s):EBI-1140972
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSFWKVAAAQ YEPRKTSLTE QVAHHLEFVR AAARQQCQLL VFPSLSLLGC DYSRRALPAP
PDLSLLDPLC YAATTWRMTI IAGLPVEYND RFIRGIAVFA PWRKTPGIYH QSHGACLGRR
SRTITVVDEQ PQGMDMDPTC SLFTTGQCLG EPDLLASARR LQFFSHQYSI AVLMANARGN
SALWDEYGRL IVRADRGSLL LVGQRSSQGW QGDIIPLR
Length

218

Mol. Wt

24.395 kDa

pI

8.8 (calculated)

Extinction coefficient

37,930 - 38,680 (calc based on 7 Y, 5 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

5..150

PF00795 Carbon-nitrogen hydrolase

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yobB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129796

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948329

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006129

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76280

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7015

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14030

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948329

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003602

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3784

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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