ynfF:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YnfF

Synonyms

oxidoreductase subunit[1], B1588[2][1], YnfF[2][1] , ECK1583, JW5260, b1588

Product description

oxidoreductase subunit paralog of DmsA[2][3];

Component of dimethyl sulfoxide reductase paralogue[3]

S- and N-oxide reductase, A subunit; probably periplasmic[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005488

binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009010

F

Seeded from EcoCyc (v14.0)

complete

GO:0005506

iron ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0408

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0009055

electron carrier activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006655

F

Seeded from EcoCyc (v14.0)

complete

GO:0009389

dimethyl sulfoxide reductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011888

F

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0030151

molybdenum ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006657

F

Seeded from EcoCyc (v14.0)

complete

GO:0030151

molybdenum ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011888

F

Seeded from EcoCyc (v14.0)

complete

GO:0030151

molybdenum ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0500

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0411

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011888

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0004

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011888

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of dimethyl sulfoxide reductase paralogue

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MMKIHTTEAL MKAEISRRSL MKTSALGSLA LASSAFTLPF SQMVRAAEAP VEEKAVWSSC
TVNCGSRCLL RLHVKDDTVY WVESDTTGDD VYGNHQVRAC LRGRSIRRRM NHPDRLKYPM
KRVGKRGEGK FERISWDEAL DTISDNLRRI LKDYGNEAVH VLYGTGVDGG NITNSNVPYR
LMNSCGGFLS RYGSYSTAQI SAAMSYMFGA NDGNSPDDIA NTKLVVMFGN NPAETRMSGG
GVTYYVEQAR ERSNARMIVI DPRYNDTAAG REDEWLPIRP GTDGALACAI AWVLITENMV
DQPFLDKYCV GYDEKTLPAN APRNAHYKAY ILGEGPDGIA KTPEWAAKIT SIPAEKIIQL
AREIGSAKPA YICQGWGPQR HSNGEQTSRA IAMLSVLTGN VGINGGNSGV REGSWDLGVE
WFPMLENPVK TQISVFTWTD AIDHGTEMTA TRDGVRGKEK LDVPIKFLWC YASNTLINQH
GDINHTHEVL QDDSKCEMIV GIDHFMTASA KYCDILLPDL MPTEQEDLIS HESAGNMGYV
ILAQPATSAK FERKPIYWML SEVAKRLGPD VYQTFTEGRS QHEWIKYLHA KTKERNPEMP
DYEEMKTTGI FKKKCPEEHY VAFRAFREDP QANPLKTPSG KIEIYSERLA KIADTWELKK
DEIIHPLPAY TPGFDGWDDP LRKTYPLQLT GFHYKARTHS SYGNIDVLQQ ACPQEVWINP
IDAQARGIRH GDTVRVFNNN GEMLIAAKVT PRILPGVTAI GQGAWLKADM FGDRVDHGGS
INILTSHRPS PLAKGNPSHS NLVQIEKV
Length

808

Mol. Wt

90.119 kDa

pI

7.0 (calculated)

Extinction coefficient

138,200 - 139,825 (calc based on 30 Y, 17 W, and 13 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-45

UniProt Manual:Signal Peptides

UniProt:P77783

Domain

52..111

PF04879 Molybdopterin oxidoreductase Fe4S4 domain

PMID:19920124[5]

Domain

114..565

PF00384 Molybdopterin oxidoreductase

PMID:19920124[5]

Domain

686..801

PF01568 Molydopterin dinucleotide binding domain

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ynfF taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:171701681

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945268

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005307

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77783

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6846

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13844

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945268

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003435

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3605

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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