yneG:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YneG

Synonyms

conserved protein[1], B1523[2][1], YneG[2][1] , ECK1516, JW1516, b1523

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

nfnB

PMID:16606699[5]

Experiment(s):EBI-1140044

Protein

rplD

PMID:16606699[5]

Experiment(s):EBI-1140044

Protein

rpsG

PMID:16606699[5]

Experiment(s):EBI-1140044

Protein

rpsM

PMID:16606699[5]

Experiment(s):EBI-1140044

Protein

alkA

PMID:16606699[5]

Experiment(s):EBI-1140044

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1140044

Protein

rplC

PMID:16606699[5]

Experiment(s):EBI-1140044, EBI-1145573

Protein

cybC

PMID:16606699[5]

Experiment(s):EBI-1140044

Protein

rplA

PMID:16606699[5]

Experiment(s):EBI-1140044

Protein

rpsD

PMID:16606699[5]

Experiment(s):EBI-1140044

Protein

napC

PMID:16606699[5]

Experiment(s):EBI-1140044

Protein

rpsC

PMID:16606699[5]

Experiment(s):EBI-1140044

Protein

rplS

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsJ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplQ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yciU

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MQSLDPLFAR LSRSKFRSRF RLGMKERQYC LEKGAPVIEQ HAADFVAKRL APALPANDGK
QTPMRGHPVF IAQHATATCC RGCLAKWHNI PQGVSLSEEQ QRYIVAVIYH WLVVQMNQP
Length

119

Mol. Wt

13.543 kDa

pI

10.1 (calculated)

Extinction coefficient

15,470 - 15,970 (calc based on 3 Y, 2 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yneG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129482

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946171

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005084

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76148

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6809

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13815

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946171

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003398

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3576

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed

Categories

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