ynbC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YnbC

Synonyms

predicted hydrolase[1], YnbC[2][1], B1410[2][1] , ECK1403, JW1407, b1410

Product description

putative methylase[2]; predicted hydrolase[3]

Putative lysophospholipase (N) and SAM methyltransferase (C)[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003674

molecular function

n/a

ND: No biological Data available

F

Missing: reference

GO:0005575

cellular component

n/a

ND: No biological Data available

C

Missing: reference

GO:0008150

biological process

n/a

ND: No biological Data available

P

Missing: reference

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1139792

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1139792

Protein

atoS

PMID:16606699[5]

Experiment(s):EBI-1139792
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MENSRIPGEH FFTTSDNTAL FYRHWPALQP GAKKVIVLFH RGHEHSGRLQ HLVDELAMPD
TAFYAWDARG HGKSSGPRGY SPSLARSVRD VDEFVRFAAS DSQVGLEEVV VIAQSVGAVL
VATWIHDYAP AIRGLVLASP AFKVKLYVPL ARPALALWHR LRGLFFINSY VKGRYLTHDR
QRGASFNNDP LITRAIAVNI LLDLYKTSER IIRDAAAITL PTQLLISGDD YVVHRQPQID
FYQRLRSPLK ELHLLPGFYH DTLGEENRAL AFEKMQSFIS RLYANKSQKF DYQHEDCTGP
SADRWRLLSG GPVPLSPVDL AYRFMRKAMK LFGTHSSGLH LGMSTGFDSG SSLDYVYQNQ
PQGSNAFGRL VDKIYLNSVG WRGIRQRKTH LQILIKQAVA DLHAKGLAVR VVDIAAGHGR
YVLDALANEP AVSDILLRDY SELNVAQGQE MIAQRGMSGR VRFEQGDAFN PEELSALTPR
PTLAIVSGLY ELFPENEQVK NSLAGLANAI EPGGILIYTG QPWHPQLEMI AGVLTSHKDG
KPWVMRVRSQ GEMDSLVRDA GFDKCTQRID EWGIFTVSMA VRRDN
Length

585

Mol. Wt

65.456 kDa

pI

9.2 (calculated)

Extinction coefficient

80,790 - 81,040 (calc based on 21 Y, 9 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

17..96

PF12146 Putative lysophospholipase

PMID:19920124[6]

Domain

273..582

PF12147 Putative lysophospholipase

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ynbC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129371

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945970

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004708

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76092

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6729

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13750

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945970

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003322

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3513

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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