ymfP:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YmfP

Synonyms

e14 prophage; conserved protein[1], B1152[2][1], YmfP[2][1]

Product description

hypothetical protein[2][3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MWYMRWEGVS DGLKVTAGSV IQRDDLVQYT TTDDATSSGG VLRVPIACSS AGAVGNADDG
TALILVTPVN GLPSSGVADT LTGGFDTEEL ETWRARVIER YYWTPQGGAD GDYVVWAKEV
PGITRAWTYR HLMGTGTVGV MIASSDLINP IPEESTETAA RQHIGPLAPV AGSDLYVFRP
VAHTVDFHIR VTPDTPEIRA AITAELRSFL LRDGYPQGEL KVSRISEAIS GANGEYSHQL
LAPVDNISIA KNELAVLGTI SWT
Length

263

Mol. Wt

28.232 kDa

pI

4.5 (calculated)

Extinction coefficient

51,910 - 52,035 (calc based on 9 Y, 7 W, and 1 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

3..228

PF04865 Baseplate J-like protein

PMID:19920124[4]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ymfP taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G6596

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14254

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003191

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4002

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003872

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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