yjjU:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YjjU

Synonyms

predicted esterase [1], B4377 [2][1], YjjU [2][1] , ECK4369, JW4340, b4377

Product description

putative transcriptional regulator[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006629

lipid metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002641

P

Seeded from EcoCyc (v14.0)

complete

GO:0006629

lipid metabolic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0443

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016035

P

Seeded from EcoCyc (v14.0)

complete

GO:0016042

lipid catabolic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0442

P

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

PMID:11967071[5]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsT

PMID:16606699[6]

Experiment(s):EBI-1147927

Protein

rplS

PMID:16606699[6]

Experiment(s):EBI-1147927

Protein

ymfG

PMID:16606699[6]

Experiment(s):EBI-1147927

Protein

rpmB

PMID:16606699[6]

Experiment(s):EBI-1147927

Protein

tatE

PMID:16606699[6]

Experiment(s):EBI-1147927

Protein

yghW

PMID:16606699[6]

Experiment(s):EBI-1147927

Protein

groL

PMID:16606699[6]

Experiment(s):EBI-1147927

Protein

rpsM

PMID:16606699[6]

Experiment(s):EBI-1147927

Protein

stpA

PMID:16606699[6]

Experiment(s):EBI-1147927

Protein

insN1

PMID:16606699[6]

Experiment(s):EBI-1147927

Protein

rpsI

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

gadB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplR

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplT

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753[7]

LCMS(ID Probability):99.5

Protein

rplS

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):5.113377

Protein

rplO

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):2.573206

Protein

rplU

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsK

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsJ

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

parC

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

cbpA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

glpD

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplM

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

groS

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):28.680500

Protein

rpsC

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[7]

LCMS(ID Probability):99.5 MALDI(Z-score):17.159390

Protein

srmB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

dnaJ

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):11.641117

Protein

lon

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

uspG

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

ybbN

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):21.226648

Protein

rplD

PMID:19402753[7]

LCMS(ID Probability):97.2 MALDI(Z-score):22.592123

Protein

rne

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

dnaG

PMID:19402753[7]

LCMS(ID Probability):98.6

Protein

rplW

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

csgD

PMID:19402753[7]

LCMS(ID Probability):98.4

Protein

appC

PMID:19402753[7]

LCMS(ID Probability):97.9

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGQRIPVTLG NIAPLSLRPF QPGRIALVCE GGGQRGIFTA GVLDEFMRAQ FNPFDLYLGT
SAGAQNLSAF ICNQPGYARK VIMRYTTKRE FFDPLRFVRG GNLIDLDWLV EATASQMPLQ
MDTAARLFDS GKSFYMCACR QDDYAPNYFL PTKQNWLDVI RASSAIPGFY RSGVSLEGIN
YLDGGISDAI PVKEAARQGA KTLVVIRTVP SQMYYTPQWF KRMERWLGDS SLQPLVNLVQ
HHETSYRDIQ QFIEKPPGKL RIFEIYPPKP LHSIALGSRI PALREDYKLG RLCGRYFLAT
VGKLLTEKAP LTRHLVPVVT PESIVIPPAP VANDTLVAEV SDAPQANDPT FNNEDLA
Length

357

Mol. Wt

39.832 kDa

pI

8.7 (calculated)

Extinction coefficient

42,860 - 43,485 (calc based on 14 Y, 4 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

27..196

PF01734 Patatin-like phospholipase

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yjjU taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132195

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948906

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014351

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39407

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7951

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12597

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948906

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004444

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2482

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Khil, PP & Camerini-Otero, RD (2002) Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44 89-105 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 7.22 7.23 7.24 7.25 7.26 7.27 7.28 7.29 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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