yjjJ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YjjJ

Synonyms

predicted DNA-binding transcriptional regulator [1], B4385 [2][1], YjjJ [2][1] , ECK4377, JW4348, b4385

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

argG

PMID:16606699[5]

Experiment(s):EBI-1147961

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1147961
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSELTDLLLQ GPRSAPELRQ RLAISQATFS RLVAREDRVI RFGKARATRY ALLRPYRGIE
RIPVWRVDDT GKAHKFADIR LCWPQGSCLV TGADGDEQWF DGLPWYLTDL RPQGFLGRAW
GRKLAAQLNL TDDIRLWQEE DVLYALTVFN GEYTGGWLVG EGNYQRWITA QHPAEIPLDQ
KLTHYEQLAS DALAGEIVGS SAGGEQPKFT YYAQTPSGNK HVLVKFTVPQ QTAVSQRWGD
LLIAESIAAQ ILRDGGIHAI ESTVLVTSNR QVFLEAERFD CKGNDGRLPI VSLEAVQSEF
ISSPGSWPQA MRRLCEQQLV THQSVAQTEV IWAFGRLIAN SDMHAGNLSF YLSEPPFALT
PVYDMLPMVY APNSAGMLRD AAIEVKFDLN VSKSAWLTAI PLAQQFWQTV ARDPRISEAF
RHIAQEMPEK IRQIEEKVAR MGG
Length

443

Mol. Wt

49.756 kDa

pI

6.5 (calculated)

Extinction coefficient

89,380 - 89,880 (calc based on 12 Y, 13 W, and 4 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Modification Site

200

phosphorylation site at S200

probability greater than 75%

PMID:17938405[6]

Modification Site

201

phosphorylation site at S201

probability less than 75%

PMID:17938405[6]

Domain

287..364

PF07804 HipA-like C-terminal domain

PMID:19920124[7]

Domain

201..281

PF07805 HipA-like N-terminal domain

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yjjJ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132202

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944883

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014383

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39410

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12342

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12342

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944883

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002217

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2246

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Macek, B et al. (2008) Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation. Mol. Cell Proteomics 7 299-307 PubMed
  7. ↑ 7.0 7.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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