yjjI:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YjjI

Synonyms

conserved protein [1], B4380 [2][1], YjjH [2][1], YjjI [2][1] , ECK4372, JW4343, yjjH, b4380

Product description

conserved hypothetical protein[2][3]

Putative glycine radical enzyme, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dnaK

PMID:15690043[5]

Experiment(s):EBI-881911
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPTSHENALQ QRCQQIVTSP VLSPEQKRHF LALEAENNLP YPQLPAEARR ALDEGVICDM
FEGHAPYKPR YVLPDYARFL ANGSEWLELE GAKDLDDALS LLTILYHHVP SVTSMPVYLG
QLDALLQPYV RILTQDEIDV RIKRFWRYLD RTLPDAFMHA NIGPSDSPIT RAILRADAEL
KQVSPNLTFI YDPEITPDDL LLEVAKNICE CSKPHIANGP VHDKIFTKGG YGIVSCYNSL
PLAGGGSTLV RLNLKAIAER SESLDDFFTR TLPHYCQQQI AIIDARCEFL YQQSHFFENS
FLVKEGLINP ERFVPMFGMY GLAEAVNLLC EKEGIAARYG KEAAANEVGY RISAQLAEFV
ANTPVKYGWQ KRAMLHAQSG ISSDIGTTPG ARLPYGDEPD PITHLQTVAP HHAYYYSGIS
DILTLDETIK RNPQALVQLC LGAFKAGMRE FTANVSGNDL VRVTGYMVRL SDLEKYRAEG
SRTNTTWLGE EAARNTRILE RQPRVISHEQ QMRFSQ
Length

516

Mol. Wt

58.021 kDa

pI

6.0 (calculated)

Extinction coefficient

56,270 - 57,395 (calc based on 23 Y, 4 W, and 9 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

21..504

PF11230 Protein of unknown function (DUF3029)

PMID:19920124[6]

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Structure
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Structures

<beststructure> gene=yjjI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132197

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948904

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014361

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P37342

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12171

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12171

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948904

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002066

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2089

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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