yjiM:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YjiM

Synonyms

predicted 2-hydroxyglutaryl-CoA dehydratase[1], B4335[2][1], YjiM[2][1] , ECK4326, JW5786, b4335

Product description

hypothetical protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006974

response to DNA damage stimulus

PMID:11967071[5]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsJ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplW

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rho

PMID:19402753[6]

MALDI(Z-score):37.145038

Protein

yiiM

PMID:19402753[6]

LCMS(ID Probability):99.0 MALDI(Z-score):23.754319

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MVRGRKIMSL VTDLPAIFDQ FSEARQTGFL TVMDLKERGI PLVGTYCTFM PQEIPMAAGA
VVVSLCSTSD ETIEEAEKDL PRNLCPLIKS SYGFGKTDKC PYFYFSDLVV GETTCDGKKK
MYEYMAEFKP VHVMQLPNSV KDDASRALWK AEMLRLQKTV EERFGHEISE DALRDAIALK
NRERRALANF YHLGQLNPPA LSGSDILKVV YGATFRFDKE ALINELDAMT ARVRQQWEEG
QRLDPRPRIL ITGCPIGGAA EKVVRAIEEN GGWVVGYENC TGAKATEQCV AETGDVYDAL
ADKYLAIGCS CVSPNDQRLK MLSQMVEEYQ VDGVVDVILQ ACHTYAVESL AIKRHVRQQH
NIPYIAIETD YSTSDVGQLS TRVAAFIEML
Length

390

Mol. Wt

43.583 kDa

pI

5.1 (calculated)

Extinction coefficient

38,850 - 40,225 (calc based on 15 Y, 3 W, and 11 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

39..383

PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yjiM taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111735

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945789

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014214

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39384

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7932

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12574

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945789

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004427

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2462

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Khil, PP & Camerini-Otero, RD (2002) Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44 89-105 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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