yjhR:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YjhR

Synonyms

KpLE2 phage-like element; predicted frameshift suppressor[1], B4308[2][1], YjhR[2][1] , ECK4299, JW4271, b4308

Product description

KpLE2 phage-like element; predicted frameshift suppressor[2][3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001736

F

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001736

P

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

iaaA

PMID:16606699[4]

Experiment(s):EBI-1147852

Protein

groL

PMID:16606699[4]

Experiment(s):EBI-1147852
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGYLHIDGRG MKPNGGSRHN PLEAETIAAW LVAHKDDIER HYGEPLYKVV GVVTPFSAQV
NAIKMSLRKL EINGKDEQGL LTVGTVHSLQ GAERAIVLFS PVYSKHEDGR FLDSNSTILN
VAVSRAKDSF LVFGDMDLIE MQPAFSPRGL LAKYLFSSDN NALQFEFQKR QDLISAHTQI
STLHGVEQHD EFLNKTLAGA QKKITIISPW LSWQKVEQTG FLASMALARS RGIDITVVTD
KNCNIAHVDD DKRQEKQHLL NDAVEKLNKM GIATKLVNRV HSKIVIEDEE LLCVGSFNWF
SATREDKYQR YDTSLVYRGE GVKNEIKAIY GSLDQRQL
Length

338

Mol. Wt

37.997 kDa

pI

7.1 (calculated)

Extinction coefficient

35,410 - 35,660 (calc based on 9 Y, 4 W, and 2 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

276..302

PF00614 Phospholipase D Active site motif

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yjhR taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

ASAP

ASAP:ABE-0014128

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944740

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39369

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7918

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12560

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944740

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004413

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2448

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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