yjhG:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YjhG

Synonyms

KpLE2 phage-like element; predicted dehydratase[1], B4297[2][1], YjhG[2][1] , ECK4286, JW4259, b4297

Product description

putative dehydratase[2]; KpLE2 phage-like element; predicted dehydratase[3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000581

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020558

F

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000581

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020558

P

Seeded from EcoCyc (v14.0)

complete

GO:0016829

lyase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

glmM

PMID:16606699[5]

Experiment(s):EBI-1147827
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSVRNIFADE SHDIYTVRTH ADGPDGELPL TAEMLINRPS GDLFGMTMNA GMGWSPDELD
RDGILLLSTL GGLRGADGKP VALALHQGHY ELDIQMKAAA EVIKANHALP YAVYVSDPCD
GRTQGTTGMF DSLPYRNDAS MVMRRLIRSL PDAKAVIGVA SCDKGLPATM MALAAQHNIA
TVLVPGGATL PAKDGEDNGK VQTIGARFAN GELSLQDARR AGCKACASSG GGCQFLGTAG
TSQVVAEGLG LAIPHSALAP SGEPVWREIA RASARAALNL SQKGITTREI LTDKAIENAM
TVHAAFGGST NLLLHIPAIA HQAGCHIPTV DDWIRINKRV PRLVSVLPNG PVYHPTVNAF
MAGGVPEVML HLRSLGLLHE DVMTVTGSTL KENLDWWEHS ERRQRFKQLL LDQEQINADE
VIMSPQQAKA RGLTSTITFP VGNIAPEGSV IKSTAIDPSM IDEQGIYYHK GVAKVYLSEK
SAIYDIKHDK IKAGDILVII GVGPSGTGME ETYQVTSALK HLSYGKHVSL ITDARFSGVS
TGACIGHVGP EALAGGPIGK LRTGDLIEIK IDCRELHGEV NFLGTRSDEQ LPSQEEATAI
LNARPSHQDL LPDPELPDDT RLWAMLQAVS GGTWTGCIYD VNKIGAALRD FMNKN
Length

655

Mol. Wt

70.017 kDa

pI

6.2 (calculated)

Extinction coefficient

57,870 - 58,995 (calc based on 13 Y, 7 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

81..637

PF00920 Dehydratase family

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yjhG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132118

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946829

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014087

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39358

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7910

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12549

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946829

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004405

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2437

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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