yjgR:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YjgR

Synonyms

predicted ATPase[1], B4263[2][1], YjgR[2][1] , ECK4256, JW4220, b4263

Product description

putative enzyme with P-loop containing nucleotide triphosphate hydrolase domain[2]; predicted ATPase[3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1147779

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1147779

Protein

yncB

PMID:19402753[6]

MALDI(Z-score):17.812949

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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSEPLLIART PDTELFLLPG MANRHGLITG ATGTGKTVTL QKLAESLSEI GVPVFMADVK
GDLTGVAQAG TVSEKLLARL KNIGVNDWQP HANPVVVWDI FGEKGHPVRA TVSDLGPLLL
ARLLNLNDVQ SGVLNIIFRI ADDQGLLLLD FKDLRAITQY IGDNAKSFQN QYGNISSASV
GAIQRGLLSL EQQGAAHFFG EPMLDIKDWM RTDANGKGVI NILSAEKLYQ MPKLYAASLL
WMLSELYEQL PEAGDLEKPK LVFFFDEAHL LFNDAPQVLL DKIEQVIRLI RSKGVGVWFV
SQNPSDIPDN VLGQLGNRVQ HALRAFTPKD QKAVKAAAQT MRANPAFDTE KAIQELGTGE
ALISFLDAKG SPSVVERAMV IAPCSRMGPV TEDERNGLIN HSPVYGKYED EVDRESAYEM
LQKGFQASTE QQNNPPAKGK EVAVDDGILG GLKDILFGTT GPRGGKKDGV VQTMAKSAAR
QVTNQIVRGM LGSLLGGRRR
Length

500

Mol. Wt

54.333 kDa

pI

6.2 (calculated)

Extinction coefficient

39,420 - 39,545 (calc based on 8 Y, 5 W, and 1 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

3..500

PF05872 Bacterial protein of unknown function (DUF853)

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yjgR taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132085

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948978

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013963

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39342

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7890

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12537

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948978

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004385

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2426

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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