yjeE:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YjeE

Synonyms

ATPase with strong ADP affinity[1], B4168[2][1], YjeE[2][1] , ECK4164, JW4126, b4168

Product description

essential protein[2]; essential protein with weak ATPase activity[3]

Putative ATPase, essential gene;[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005515

protein binding

PMID:19376873[5]

IPI: Inferred from Physical Interaction

UniProtKB:P76256

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yiiD

PMID:15690043[6]

Experiment(s):EBI-883876

Protein

yjeF

PMID:15690043[6]

Experiment(s):EBI-883876, EBI-886481

Protein

dnaK

PMID:15690043[6]

Experiment(s):EBI-891042

Protein

gadB

PMID:15690043[6]

Experiment(s):EBI-891042

Protein

gapA

PMID:15690043[6]

Experiment(s):EBI-891042

Protein

metE

PMID:15690043[6]

Experiment(s):EBI-891042

Protein

groL

PMID:15690043[6]

Experiment(s):EBI-891042

Protein

pflB

PMID:15690043[6]

Experiment(s):EBI-891042

Protein

purA

PMID:15690043[6]

Experiment(s):EBI-891042

Protein

rplL

PMID:15690043[6]

Experiment(s):EBI-891042

Protein

rpsA

PMID:15690043[6]

Experiment(s):EBI-891042

Protein

paaB

PMID:16606699[7]

Experiment(s):EBI-1147604

Protein

yjeN

PMID:16606699[7]

Experiment(s):EBI-1147604

Protein

rpsD

PMID:16606699[7]

Experiment(s):EBI-1147604

Protein

nadE

PMID:16606699[7]

Experiment(s):EBI-1147604

Protein

rpsB

PMID:16606699[7]

Experiment(s):EBI-1147604

Protein

rplN

PMID:16606699[7]

Experiment(s):EBI-1147604

Protein

paaI

PMID:16606699[7]

Experiment(s):EBI-1147604

Protein

rpsE

PMID:16606699[7]

Experiment(s):EBI-1147604

Protein

rpsC

PMID:16606699[7]

Experiment(s):EBI-1147604

Protein

groS

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

pflB

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

purA

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

groL

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

gadB

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

metE

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

gapA

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

yjeF

PMID:19402753[8]

MALDI(Z-score):23.218634

Protein

yiiD

PMID:19402753[8]

MALDI(Z-score):39.625888

Protein

rplL

PMID:19402753[8]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MMNRVIPLPD EQATLDLGER VAKACDGATV IYLYGDLGAG KTTFSRGFLQ ALGHQGNVKS
PTYTLVEPYT LDNLMVYHFD LYRLADPEEL EFMGIRDYFA NDAICLVEWP QQGTGVLPDP
DVEIHIDYQA QGREARVSAV SSAGELLLAR LAG
Length

153

Mol. Wt

16.852 kDa

pI

4.4 (calculated)

Extinction coefficient

17,420 - 17,670 (calc based on 8 Y, 1 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

14..136

PF02367 Uncharacterised P-loop hydrolase UPF0079

PMID:19920124[9]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yjeE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131990

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948684

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AF67

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948684

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Handford, JI et al. (2009) Conserved network of proteins essential for bacterial viability. J. Bacteriol. 191 4732-49 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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