yjdJ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YjdJ

Synonyms

predicted acyltransferase with acyl-CoA N-acyltransferase domain[1], B4127[2][1], YjdJ[2][1] , ECK4120, JW4088, b4127

Product description

predicted acyltransferase with acyl-CoA N-acyltransferase domain[2][3]

Putative acetyltransferase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0008080

N-acetyltransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000182

F

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000182

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yidK

PMID:16606699[5]

Experiment(s):EBI-1147506

Protein

yegQ

PMID:16606699[5]

Experiment(s):EBI-1147506

Protein

ugpB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

atpD

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

gnd

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

tig

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

dnaN

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

malP

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yfcZ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yfiD

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

pflB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

dps

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

xseB

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MEIREGHNKF YINDKQGKQI AEIVFVPTGE NLAIIEHTDV DESLKGQGIG KQLVAKVVEK
MRREKRKIIP LCPFAKHEFD KTREYDDIRS
Length

90

Mol. Wt

10.467 kDa

pI

8.3 (calculated)

Extinction coefficient

2,980 - 3,105 (calc based on 2 Y, 0 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

6..79

PF00583 Acetyltransferase (GNAT) family

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yjdJ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131953

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948647

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013515

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39274

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7829

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12467

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948647

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004326

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2360

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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