yiiM:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YiiM

Synonyms

conserved protein[1], B3910[2][1], YiiM[2][1] , ECK3903, JW5559, b3910

Product description

conserved protein[2][3]

6-N-hydroxylaminopurine resistance[4][5], Molybdenum Cofactor binding protein[6][5][4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005302

F

Seeded from EcoCyc (v14.0)

complete

GO:0030151

molybdenum ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005302

F

Seeded from EcoCyc (v14.0)

complete

GO:0030170

pyridoxal phosphate binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005302

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

pfkA

PMID:19402753[7]

MALDI(Z-score):37.059234

Protein

rho

PMID:19402753[7]

MALDI(Z-score):39.242420

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGKFLVEREQ MRYPVDVYTG KIQAYPEGKP SAIAKIQVDG ELMLTELGLE GDEQAEKKVH
GGPDRALCHY PREHYLYWAR EFPEQAELFV APAFGENLST DGLTESNVYM GDIFRWGEAL
IQVSQPRSPC YKLNYHFDIS DIAQLMQNTG KVGWLYSVIA PGKVSADAPL ELVSRVSDVT
VQEAAAIAWH MPFDDDQYHR LLSAAGLSKS WTRTMQKRRL SGKIEDFSRR LWGK
Length

234

Mol. Wt

26.561 kDa

pI

6.0 (calculated)

Extinction coefficient

49,390 - 49,640 (calc based on 11 Y, 6 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

168..214

PF03475 3-alpha domain

PMID:19920124[8]

Domain

37..162

PF03473 MOSC domain

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yiiM taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111666

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948406

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012769

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P32157

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11870

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11870

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948406

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001801

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1816

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 Kozmin, SG et al. (2008) YcbX and yiiM, two novel determinants for resistance of Escherichia coli to N-hydroxylated base analogues. Mol. Microbiol. 68 51-65 PubMed
  5. ↑ 5.0 5.1 Kozmin, SG et al. (2010) Role for CysJ flavin reductase in molybdenum cofactor-dependent resistance of Escherichia coli to 6-N-hydroxylaminopurine. J. Bacteriol. 192 2026-33 PubMed
  6. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  7. ↑ 7.0 7.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ 8.0 8.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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