yiiG:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YiiG

Synonyms

conserved protein[1], B3896[2][1], YiiG[2][1] , ECK3889, JW3867, b3896

Product description

conserved protein[2]; putative lipoprotein[3]

Novel verified lipoprotein, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yghZ

PMID:16606699[5]

Experiment(s):EBI-1146933

Protein

pepB

PMID:16606699[5]

Experiment(s):EBI-1146933
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKRNLLSSAI IVAIMSLGLT GCDDKKAETE TLPPANSQPA APAPEAKPTE APVAKAEAKP
ETPAQPVVDE QAVFDEKMDV YIKCYNKLQI PVQRSLARYA DWLKDFKQGP TGEERTVYGI
YGISESNLAE CEKGVKSAVA LTPALQPIDG VAVSYIDAAV ALGNTINEMD KYYTQENYKD
DAFAKGKTLH QTFLKNLEAF EPVAESYHAA IQEINDKRQL AELKNIEERE GKTFHYYSLA
VMISAKQINN LISQDKFDAE AAMKKVSELE TLVAQAKEAD KGGMNFSFIN SAGQYQLEAK
KYVRRIRDKV PYSDWDKEQL QDANSSWMVE DSFPRALREY NEMVDDYNSL R
Length

351

Mol. Wt

39.294 kDa

pI

4.9 (calculated)

Extinction coefficient

41,830 - 42,205 (calc based on 17 Y, 3 W, and 3 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=yiiG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131736

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948392

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012718

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P32151

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11860

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11860

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948392

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001791

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1806

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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