yihU:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YihU

Synonyms

predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain[1], B3882[2][1], YihU[2][1] , ECK3875, JW3853, b3882

Product description

predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain[2][3]

Function unknown[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

pflA

PMID:16606699[5]

Experiment(s):EBI-1146877

Protein

phoB

PMID:16606699[5]

Experiment(s):EBI-1146877

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1146877

Protein

lldD

PMID:16606699[5]

Experiment(s):EBI-1146877

Protein

fre

PMID:16606699[5]

Experiment(s):EBI-1146877
edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAAIAFIGLG QMGSPMASNL LQQGHQLRVF DVNAEAVRHL VDKGATPAAN PAQAAKDAEF
IITMLPNGDL VRNVLFGENG VCEGLSTDAL VIDMSTIHPL QTDKLIADMQ AKGFSMMDVP
VGRTSANAIT GTLLLLAGGT AEQVERATPI LMAMGSELIN AGGPGMGIRV KLINNYMSIA
LNALSAEAAV LCEALNLPFD VAVKVMSGTA AGKGHFTTSW PNKVLSGDLS PAFMIDLAHK
DLGIALDVAN QLHVPMPLGA ASREVYSQAR AAGRGRQDWS AILEQVRVSA GMTAKVKM
Length

298

Mol. Wt

31.158 kDa

pI

6.2 (calculated)

Extinction coefficient

13,980 - 14,230 (calc based on 2 Y, 2 W, and 2 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

1..164

PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase

PMID:19920124[6]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yihU taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131722

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948372

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012678

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A9V8

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11847

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11847

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948372

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001778

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1793

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yihU:Gene_Product(s)&oldid=1495641"