yifB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YifB

Synonyms

predicted bifunctional enzyme and transcriptional regulator[1], B3765[2][1], YifB[2][1] , ECK3758, JW3738, b3765

Product description

predicted ATP-dependent protease[2][3]

Competence Mg chelatase ComM homolog, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0015979

photosynthesis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000523

P

Seeded from EcoCyc (v14.0)

complete

GO:0015995

chlorophyll biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000523

P

Seeded from EcoCyc (v14.0)

complete

GO:0016851

magnesium chelatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000523

F

Seeded from EcoCyc (v14.0)

complete

GO:0017111

nucleoside-triphosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MHIMVTQGGL MSLSIVHTRA ALGVNAPPIT VEVHISKGLP GLTMVGLPET TVKEARDRVR
SAIINSGYEY PAKKITINLA PADLPKEGGR YDLPIAIALL AASEQLTANK LDEYELVGEL
ALTGALRGVP GAISSATEAI KSGRKIIVAK DNEDEVGLIN GEGCLIADHL QAVCAFLEGK
HALERPKPTD AVSRALQHDL SDVIGQEQGK RGLEITAAGG HNLLLIGPPG TGKTMLASRI
NGLLPDLSNE EALESAAILS LVNAESVQKQ WRQRPFRSPH HSASLTAMVG GGAIPGPGEI
SLAHNGVLFL DELPEFERRT LDALREPIES GQIHLSRTRA KITYPARFQL VAAMNPSPTG
HYQGNHNRCT PEQTLRYLNR LSGPFLDRFD LSLEIPLPPP GILSKTVVPG ESSATVKQRV
MAARERQFKR QNKLNAWLDS PEIRQFCKLE SEDAMWLEGT LIHLGLSIRA WQRLLKVART
IADIDQSDII TRQHLQEAVS YRAIDRLLIH LQKLLT
Length

516

Mol. Wt

56.216 kDa

pI

7.7 (calculated)

Extinction coefficient

33,920 - 34,420 (calc based on 8 Y, 4 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

189..391

PF01078 Magnesium chelatase, subunit ChlI

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yifB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:145698331

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948282

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012300

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P22787

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11260

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11260

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948282

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001235

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1240

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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