yieL:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YieL

Synonyms

predicted xylanase[1], B3719[2][1], YieL[2][1] , ECK3712, JW5612, b3719

Product description

putative xylanase[2][3]

Function unknown, bgl operon; endo-1,4-beta-xylanase homolog[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0004553

hydrolase activity, hydrolyzing O-glycosyl compounds

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004193

F

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004193

P

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MVMELNERNI TMNIKIAALT LAIASGISAQ WAIAADMPAS PAPTIPVKQY VTQVNADNSV
TFRYFAPGAK NVSVVVGVPV PDNIHPMTKD EAGVWSWRTP ILKGNLYEYF FNVDGVRSID
TGTAMTNPQR QVNSSMILVP GSYLDTRSVA HGDLIAITYH SNALQSERQM YVWTPPGYTG
MGEPLPVLYF YHGFGDTGRS AIDQGRIPQI MDNLLAEGKI KPMLVVIPDT ETDAKGIIPE
DFVPQERRKV FYPLNAKAAD RELMNDIIPL ISKRFNVRKD ADGRALAGLS QGGYQALVSG
MNHLESFGWL ATFSGVTTTT VPDEGVAARL NDPAAINQQL RNFTVVVGDK DVVTGKDIAG
LKTELEQKKI NFDYQEYPGL NHEMDVWRPA YAAFVQKLFK
Length

400

Mol. Wt

44.086 kDa

pI

6.1 (calculated)

Extinction coefficient

55,350 (calc based on 15 Y, 6 W, and 0 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

38..123

PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)

PMID:19920124[5]

Domain

150..387

PF00756 Putative esterase

PMID:19920124[5]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yieL taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:145698330

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948272

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012163

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P31471

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11729

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11729

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948272

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001668

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1680

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yieL:Gene_Product(s)&oldid=1495499"