yidE:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YidE

Synonyms

predicted transporter[1], B3685[2][1], YibE[2][1], YidE[2][1] , ECK3677, JW3662, yibE, b3685

Product description

putative transport protein[2][3]

Putative AAE family transporter, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

F

Seeded from EcoCyc (v14.0)

complete

GO:0005215

transporter activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01016

F

Seeded from EcoCyc (v14.0)

complete

GO:0005488

binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01016

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01016

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0006813

potassium ion transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006037

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

P

Seeded from EcoCyc (v14.0)

complete

GO:0008324

cation transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006037

F

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLSQEKWTMS DIALTVSILA LVAVVGLFIG NVKFRGIGLG IGGVLFGGII VGHFVSQAGM
TLSSDMLHVI QEFGLILFVY TIGIQVGPGF FASLRVSGLR LNLFAVLIVI IGGLVTAILH
KLFDIPLPVV LGIFSGAVTN TPALGAGQQI LRDLGTPMEM VDQMGMSYAM AYPFGICGIL
FTMWMLRVIF RVNVETEAQQ HESSRTNGGA LIKTINIRVE NPNLHDLAIK DVPILNGDKI
ICSRLKREET LKVPSPDTII QLGDLLHLVG QPADLHNAQL VIGQEVDTSL STKGTDLRVE
RVVVTNENVL GKRIRDLHFK ERYDVVISRL NRAGVELVAS GDISLQFGDI LNLVGRPSAI
DAVANVLGNA QQKLQQVQML PVFIGIGLGV LLGSIPVFVP GFPAALKLGL AGGPLIMALI
LGRIGSIGKL YWFMPPSANL ALRELGIVLF LSVVGLKSGG DFVNTLVNGE GLSWIGYGAL
ITAVPLITVG ILARMLAKMN YLTMCGMLAG SMTDPPALAF ANNLHPTSGA AALSYATVYP
LVMFLRIITP QLLAVLFWSI G
Length

561

Mol. Wt

59.944 kDa

pI

8.4 (calculated)

Extinction coefficient

40,910 - 41,285 (calc based on 9 Y, 5 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

206..275

PF02080 TrkA-C domain

PMID:19920124[5]

Domain

290..360

PF02080 TrkA-C domain

PMID:19920124[5]

Domain

10..180

PF06826 Predicted Permease Membrane Region

PMID:19920124[5]

Domain

373..547

PF06826 Predicted Permease Membrane Region

PMID:19920124[5]

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<motif_map/>

tmhmm.php?gene=yidE&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yidE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111636

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948193

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012051

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P60872

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11536

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11536

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948193

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001490

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1498

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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