yibL:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YibL

Synonyms

conserved protein[1], B3602[2][1], YibL[2][1] , ECK3592, JW3577, b3602

Product description

conserved protein[2][3]

Ribosome-associated protein, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dinG

PMID:16606699[5]

Experiment(s):EBI-1146214

Protein

hflB

PMID:16606699[5]

Experiment(s):EBI-1146214

Protein

yciA

PMID:16606699[5]

Experiment(s):EBI-1146214

Protein

yqgC

PMID:16606699[5]

Experiment(s):EBI-1146214

Protein

aceF

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rplA

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rplC

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rplM

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rplR

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rplT

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rplV

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rpmB

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rpsB

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rpsE

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rpsG

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rpsN

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

yfiF

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

yhbY

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rluE

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rplS

PMID:15690043[6]

Experiment(s):EBI-887431

Protein

rplR

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplT

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

yhbY

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplM

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rluE

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

yfiF

PMID:19402753[7]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKEVEKNEIK RLSDRLDAIR HQQADLSLVE AADKYAELEK EKATLEAEIA RLREVHSQKL
SKEAQKLMKM PFQRAITKKE QADMGKLKKS VRGLVVVHPM TALGREMGLQ EMTGFSKTAF
Length

120

Mol. Wt

13.695 kDa

pI

9.9 (calculated)

Extinction coefficient

1,490 (calc based on 1 Y, 0 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

66..119

PF10928 Protein of unknown function (DUF2810)

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yibL taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131473

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948115

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011773

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ADK8

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11964

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11964

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948115

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001890

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1907

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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