yibA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YibA

Synonyms

lyase containing HEAT-repeat[1], B3594[2][1], YibA[2][1] , ECK3583, JW3568, b3594

Product description

predicted lyase containing HEAT-repeat[2][3]

Function unknown, homologous to phycobiliprotein lyases and Synechocystis IscA-binding protein IaiH; contains one HEAT-like motif[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005488

binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011989

F

Seeded from EcoCyc (v14.0)

complete

GO:0005488

binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016024

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsB

PMID:16606699[5]

Experiment(s):EBI-1146192

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1146192

Protein

priA

PMID:16606699[5]

Experiment(s):EBI-1146192

Protein

uup

PMID:16606699[5]

Experiment(s):EBI-1146192

Protein

torY

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rraB

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):39.285468

Protein

glpC

PMID:19402753[6]

MALDI(Z-score):38.283489

Protein

aidB

PMID:19402753[6]

MALDI(Z-score):27.605846

Protein

asr

PMID:19402753[6]

LCMS(ID Probability):99.0

Protein

trmH

PMID:19402753[6]

MALDI(Z-score):36.678748

Protein

trpR

PMID:19402753[6]

LCMS(ID Probability):98.4

Protein

fiu

PMID:19402753[6]

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSNTYQKRKA SKEYGLYNQC KKLNDDELFR LLDDHNSLKR ISSARVLQLR GGQDAVRLAI
EFCSDKNYIR RDIGAFILGQ IKICKKCEDN VFNILNNMAL NDKSACVRAT AIESTAQRCK
KNPIYSPKIV EQSQITAFDK STNVRRATAF AISVINDKAT IPLLINLLKD PNGDVRNWAA
FAININKYDN SDIRDCFVEM LQDKNEEVRI EAIIGLSYRK DKRVLSVLCD ELKKNTVYDD
IIEAAGELGD KTLLPVLDTM LYKFDDNEII TSAIDKLKRS
Length

280

Mol. Wt

31.875 kDa

pI

8.5 (calculated)

Extinction coefficient

18,910 - 19,910 (calc based on 9 Y, 1 W, and 8 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

160..184

PF02985 HEAT repeat

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yibA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131465

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948108

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011744

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ADK6

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11187

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11187

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948108

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001168

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1173

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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