yhjK:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YhjK |
|---|---|
| Synonyms |
predicted diguanylate cyclase[1], B3529[2][1], YhjK[2][1] , ECK3514, JW5943, b3529 |
| Product description |
predicted zinc-dependent peptidase[2][3] Putative c-di-GMP dual activity enzyme, function unknown; expressed protein[4] |
| EC number (for enzymes) |
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| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0004871 |
signal transducer activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0007165 |
signal transduction |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016020 |
membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016021 |
integral to membrane |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016021 |
integral to membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016021 |
integral to membrane |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-9909 |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
|
plasma membrane |
C-terminus localized in the cytoplasm with 3 predicted transmembrane domains |
Daley et al. (2005) [5] |
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| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MAMVAAVVLV FVFIFCTVLL FHLVQQNRYN TATQLESIAR SVREPLSSAI LKGDIPEAEA ILASIKPAGV VSRADVVLPN QFQALRKSFI PERPVPVMVT RLFELPVQIS LGVYSLERPA NPQPIAYLVL QADSFRMYKF VMSTLSTLVT IYLLLSLILT VAISWCINRL ILHPLRNIAR ELNAIPAKEL VGHQLALPRL HQDDEIGMLV RSYNLNQQLL QRHYEEQNEN AMRFPVSDLP NKALLMEMLE QVVARKQTTA LMIITCETLR DTAGVLKEAQ REILLLTLVE KLKSVLSPRM ILAQISGYDF AVIANGVQEP WHAITLGQQV LTIMSERLPI ERIQLRPHCS IGVAMFYGDL TAEQLYSRAI SAAFTARHKG KNQIQFFDPQ QMEAAQKRLT EESDILNALE NHQFAIWLQP QVEMTSGKLV SAEVLLRIQQ PDGSWDLPDG LIDRIECCGL MVTVGHWVLE ESCRLLAAWQ ERGIMLPLSV NLSALQLMHP NMVADMLELL TRYRIQPGTL ILEVTESRRI DDPHAAVAIL RPLRNAGVRV ALDDFGMGYA GLRQLQHMKS LPIDVLKIDK MFVEGLPGDS SMIAAIIMLA QSLNLQMIAE GVETEAQRDW LAKAGVGIAQ GFLFARPLPI EIFEESYLEE K |
| Length |
651 |
| Mol. Wt |
73.082 kDa |
| pI |
6.1 (calculated) |
| Extinction coefficient |
57,870 - 58,745 (calc based on 13 Y, 7 W, and 7 C residues) |
| edit table |
Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
- ↑ 6.0 6.1 6.2 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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