yhjG:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YhjG

Synonyms

predicted outer membrane biogenesis protein[1], B3524[2][1], YhjF[2][1], YhjG[2][1] , ECK3509, JW3492, yhjF, b3524

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9904

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

mdh

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplW

PMID:19402753[5]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRKRTMSKAG KITAAISGAF LLLIVVAIIL IATFDWNRLK PTINQKVSAE LNRPFAIRGD
LGVVWERQKQ ETGWRSWVPW PHVHAEDIIL GNPPDIPEVT MVHLPRVEAT LAPLALLTKT
VWLPWIKLEK PDARLIRLSE KNNNWTFNLA NDDNKDANAK PSAWSFRLDN ILFDQGRIAI
DDKVSKADLE IFVDPLGKPL PFSEVTGSKG KADKEKVGDY VFGLKAQGRY NGEPLTGTGK
IGGMLALRGE GTPFPVQADF RSGNTRVAFD GVVNDPMKMG GVDLRLKFSG DSLGDLYELT
GVLLPDTPPF ETDGRLVAKI DTEKSSVFDY RGFNGRIGDS DIHGSLVYTT GKPRPKLEGD
VESRQLRLAD LGPLIGVDSG KGAEKSKRSE QKKGEKSVQP AGKVLPYDRF ETDKWDVMDA
DVRFKGRRIE HGSSLPISDL STHIILKNAD LRLQPLKFGM AGGSIAANIH LEGDKKPMQG
RADIQARRLK LKELMPDVEL MQKTLGEMNG DAELRGSGNS VAALLGNSNG NLKLLMNDGL
VSRNLMEIVG LNVGNYIVGA IFGDDEVRVN CAAANLNIAN GVARPQIFAF DTENALINVT
GTASFASEQL DLTIDPESKG IRIITLRSPL YVRGTFKNPQ AGVKAGPLIA RGAVAAALAT
LVTPAAALLA LISPSEGEAN QCRTILSQMK K
Length

691

Mol. Wt

75.133 kDa

pI

9.3 (calculated)

Extinction coefficient

66,920 - 67,170 (calc based on 8 Y, 10 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

6..588

PF05170 AsmA family

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yhjG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:226524754

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948043

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011512

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P37645

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12251

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12251

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948043

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002133

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2161

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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