yhhX:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YhhX

Synonyms

predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain[1], B3440[2][1], YhhX[2][1] , ECK3425, JW3403, b3440

Product description

G7757[2][3]

Putative oxidoreductase, expressed protein; ydgJ paralog[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

F

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004104

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

P

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000683

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004104

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004104

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1145905

Protein

hupB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplP

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplK

PMID:19402753[6]

LCMS(ID Probability):99.5

Protein

rplI

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

adhE

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplM

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplT

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yhbY

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

rplW

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yfiF

PMID:19402753[6]

LCMS(ID Probability):99.4

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MVINCAFIGF GKSTTRYHLP YVLNRKDSWH VAHIFRRHAK PEEQAPIYSH IHFTSDLDEV
LNDPDVKLVV VCTHADSHFE YAKRALEAGK NVLVEKPFTP TLAQAKELFA LAKSKGLTVT
PYQNRRFDSC FLTAKKAIES GKLGEIVEVE SHFDYYRPVA ETKPGLPQDG AFYGLGVHTM
DQIISLFGRP DHVAYDIRSL RNKANPDDTF EAQLFYGDLK AIVKTSHLVK IDYPKFIVHG
KKGSFIKYGI DQQETSLKAN IMPGEPGFAA DDSVGVLEYV NDEGVTVREE MKPEMGDYGR
VYDALYQTIT HGAPNYVKES EVLTNLEILE RGFEQASPST VTLAK
Length

345

Mol. Wt

38.765 kDa

pI

6.5 (calculated)

Extinction coefficient

30,830 - 31,205 (calc based on 17 Y, 1 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

3..123

PF01408 Oxidoreductase family, NAD-binding Rossmann fold

PMID:19920124[7]

Domain

135..239

PF02894 Oxidoreductase family, C-terminal alpha/beta domain

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yhhX taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131312

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947944

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011232

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P46853

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7757

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12944

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947944

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004297

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2778

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ 7.0 7.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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