yhhW:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YhhW

Synonyms

predicted protein[1], B3439[2][1], YhhW[2][1] , ECK3424, JW3402, b3439

Product description

pirin-like protein[2][3]

Quercetinase activity, in vitro; physiological role unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

betI

PMID:16606699[5]

Experiment(s):EBI-1145897

Protein

ybfD

PMID:16606699[5]

Experiment(s):EBI-1145897

Protein

ftsZ

PMID:16606699[5]

Experiment(s):EBI-1145897

Protein

cueR

PMID:16606699[5]

Experiment(s):EBI-1145897

Protein

sucB

PMID:16606699[5]

Experiment(s):EBI-1145897

Protein

zwf

PMID:16606699[5]

Experiment(s):EBI-1145897

Protein

rpsP

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

hdeA

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

yhhX

PMID:19402753[6]

MALDI(Z-score):33.139456

Protein

rplL

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIYLRKANER GHANHGWLDS WHTFSFANYY DPNFMGFSAL RVINDDVIEA GQGFGTHPHK
DMEILTYVLE GTVEHQDSMG NKEQVPAGEF QIMSAGTGIR HSEYNPSSTE RLHLYQIWIM
PEENGITPRY EQRRFDAVQG KQLVLSPDAR DGSLKVHQDM ELYRWALLKD EQSVHQIAAE
RRVWIQVVKG NVTINGVKAS TSDGLAIWDE QAISIHADSD SEVLLFDLPP V
Length

231

Mol. Wt

26.278 kDa

pI

5.2 (calculated)

Extinction coefficient

44,920 (calc based on 8 Y, 6 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

3..119

PF02678 Pirin

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yhhW taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131311

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947945

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011228

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P46852

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7756

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12943

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947945

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004296

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2777

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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