yhgF:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YhgF |
|---|---|
| Synonyms |
predicted transcriptional accessory protein[1], B3407[2][1], YhgF[2][1] , ECK3394, JW3370, b3407 |
| Product description |
predicted transcriptional accessory protein[2][3] Putative transcription accessory factor; contains S1 RNA-binding domain; low abundance protein[4] |
| EC number (for enzymes) |
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| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003723 |
RNA binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0003723 |
RNA binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016788 |
hydrolase activity, acting on ester bonds |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
dnaC |
Experiment(s):EBI-1145821 | ||
|
Protein |
gltX |
Experiment(s):EBI-1145821 | ||
|
Protein |
rpsT |
LCMS(ID Probability):99.6 | ||
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MPFIARYRKE ITGGLDDTQL RNLETRLSYL RELEERRQAI LKSISEQGKL TDDLAKAINA TLSKTELEDL YLPYKPKRRT RGQIAIEAGL EPLADLLWSD PSHTPEVAAA QYVYADKGVA DTKAALDGAR YILMERFAED AALLAKVRDY LWKNAHLVST VVSGKEEEGA KFRDYFDHHE PLSTVPSHRA LAMFRGRNEG VLQLSLNADP QFDEPPKESY CEQIIMDHLG LRLNNAPADS WRKGVVSWTW RIKVLMHLET ELMGTVRERA EDEAINVFAR NLHDLLMAAP AGLRATMGLD PGLRTGVKVA VVDATGKLVA TDTIYPHTGQ AAKAAMTVAA LCEKHNVELV AIGNGTASRE TERFYLDVQK QFPKVTAQKV IVSEAGASVY SASELAAQEF PDLDVSLRGA VSIARRLQDP LAELVKIDPK SIGVGQYQHD VSQTQLARKL DAVVEDCVNA VGVDLNTASV PLLTRVAGLT RMMAQNIVAW RDENGQFQNR QQLLKVSRLG PKAFEQCAGF LRINHGDNPL DASTVHPEAY PVVERILAAT QQALKDLMGN SSELRNLKAS DFTDEKFGVP TVTDIIKELE KPGRDPRPEF KTAQFADGVE TMNDLQPGMI LEGAVTNVTN FGAFVDIGVH QDGLVHISSL SNKFVEDPHT VVKAGDIVKV KVLEVDLQRK RIALTMRLDE QPGETNARRG GGNERPQNNR PAAKPRGREA QPAGNSAMMD ALAAAMGKKR |
| Length |
740 |
| Mol. Wt |
81.506 kDa |
| pI |
6.5 (calculated) |
| Extinction coefficient |
55,350 - 55,850 (calc based on 15 Y, 6 W, and 4 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
- ↑ 7.0 7.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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