yhfX:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YhfX

Synonyms

predicted amino acid racemase[1], B3381[2][1], YhfX[2][1] , ECK3368, JW3344, b3381

Product description

predicted amino acid racemase[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsD

PMID:16606699[5]

Experiment(s):EBI-1145719

Protein

rplC

PMID:16606699[5]

Experiment(s):EBI-1145719
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MFVEALKRQN PALISAALSL WQQGKIAPDS WVIDVDQILE NGKRLIETAR LYGIELYLMT
KQFGRNPWLA EKLLALGYSG IVAVDYKEAR VMRRAGLPVA HQGHLVQIPC HQVADAVEQG
TDVITVFTLD KAREVSAAAV KAGRIQSVLL KVYSDDDFLY PGQESGFALK VLPEIVAEIQ
NLPGLHLAGL THFPCLLWDE AVGKVLPTPN LHTLIQARDQ LAKSGIALEQ LNAPSATSCT
SLPLLAQYGV THAEPGHALT GTIPANQQGD QPERIAMLWL SEISHHFRGD SYCYGGGYYR
RGHAQHALVF TPENQKITET NLKTVDDSSI DYTLPLAGEF PVSSAVVLCF RTQIFVTRSD
VVLVSGIHRG EPEIVGRYDS LGNSLGA
Length

387

Mol. Wt

42.294 kDa

pI

6.3 (calculated)

Extinction coefficient

46,870 - 47,495 (calc based on 13 Y, 5 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

33..264

PF01168 Alanine racemase, N-terminal domain

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yhfX taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131259

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947889

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011048

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P45550

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7733

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12919

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947889

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004276

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2755

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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