yhfS:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YhfS

Synonyms

conserved protein[1], B3376[2][1], YhfS[2][1] , ECK3363, JW3339, b3376

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015421

F

Seeded from EcoCyc (v14.0)

complete

GO:0009058

biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004839

P

Seeded from EcoCyc (v14.0)

complete

GO:0016769

transferase activity, transferring nitrogenous groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004839

F

Seeded from EcoCyc (v14.0)

complete

GO:0030170

pyridoxal phosphate binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004839

F

Seeded from EcoCyc (v14.0)

complete

GO:0030170

pyridoxal phosphate binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015421

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsD

PMID:16606699[5]

Experiment(s):EBI-1145709

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1145709
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKTFPLQSLT IIEAQQKQFA LVDSICRHFP GSEFLTGGDL GLTPGLNQPR VTQRVEQVLA
DAFHAQAAAL VQGAGTGAIR AGLAALLKPG QRLLVHDAPV YPTTRVIIEQ MGLTLITVDF
NDLSALKQVV DEQQPDAALV QHTRQQPQDS YVLADVLATL RAAGVPALTD DNYAVMKVAR
IGCECGANVS TFSCFKLFGP EGVGAVVGDA DVINRIRATL YSGGSQIQGA QALEVLRGLV
FAPVMHAVQA GVSERLLALL NGGAVPEVKS AVIANAQSKV LIVEFHQPIA ARVLEEAQKR
GALPYPVGAE SKYEIPPLFY RLSGTFRQAN PQSEHCAIRI NPNRSGEETV LRILRESIAS I
Length

361

Mol. Wt

38.598 kDa

pI

6.9 (calculated)

Extinction coefficient

10,430 - 11,055 (calc based on 7 Y, 0 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

39..236

PF00155 Aminotransferase class I and II

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yhfS taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131254

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947884

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011035

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P45545

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7728

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12914

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947884

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004271

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2750

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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