yhdE:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YhdE

Synonyms

conserved protein[1], B3248[2][1], YhdE[2][1] , ECK3236, JW3217, b3248

Product description

conserved protein[2][3]

Function unknown; homologous to B. subtilis maf; yceF paralog[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00528

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003697

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0047429

nucleoside-triphosphate diphosphatase activity

PMID:24210219[5]

IDA: Inferred from Direct Assay

F

Fig. 1

complete

GO:0036218

dTTP diphosphatase activity

PMID:24210219[5]

IDA: Inferred from Direct Assay

F

Fig. 1

complete

GO:0036221

UTP diphosphatase activity

PMID:24210219[5]

IDA: Inferred from Direct Assay

F

Fig. 1

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

qseC

PMID:16606699[6]

Experiment(s):EBI-1145294

Protein

pepD

PMID:16606699[6]

Experiment(s):EBI-1145294
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTSLYLASGS PRRQELLAQL GVTFERIVTG IEEQRQPQES AQQYVVRLAR EKARAGVAQT
AKDLPVLGAD TIVILNGEVL EKPRDAEHAA QMLRKLSGQT HQVMTAVALA DSQHILDCLV
VTDVTFRTLT DEDIAGYVAS DEPLDKAGAY GIQGLGGCFV RKINGSYHAV VGLPLVETYE
LLSNFNALRE KRDKHDG
Length

197

Mol. Wt

21.514 kDa

pI

5.7 (calculated)

Extinction coefficient

8,940 - 9,190 (calc based on 6 Y, 0 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

2..192

PF02545 Maf-like protein

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yhdE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

The X-ray crystallographic structure of the paralogous protein YceF is available.[[1]]

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131136

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947753

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010653

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P25536

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11298

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11298

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947753

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001271

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1275

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Tchigvintsev, A et al. (2013) Biochemical and structural studies of conserved Maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides. Chem. Biol. 20 1386-98 PubMed
  6. ↑ 6.0 6.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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