yhbW:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YhbW

Synonyms

predicted enzyme[1], B3160[2][1], YhbW[2][1] , ECK3148, JW3129, b3160

Product description

conserved protein[2][3]

Function unknown, luciferase-like[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ygeR

PMID:16606699[5]

Experiment(s):EBI-1144968

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1144968

Protein

groS

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTDKTIAFSL LDLAPIPEGS SAREAFSHSL DLARLAEKRG YHRYWLAEHH NMTGIASAAT
SVLIGYLAAN TTTLHLGSGG VMLPNHSPLV IAEQFGTLNT LYPGRIDLGL GRAPGSDQRT
MMALRRHMSG DIDNFPRDVA ELVDWFDARD PNPHVRPVPG YGEKIPVWLL GSSLYSAQLA
AQLGLPFAFA SHFAPDMLFQ ALHLYRSNFK PSARLEKPYA MVCINIIAAD SNRDAEFLFT
SMQQAFVKLR RGETGQLPPP IQNMDQFWSP SEQYGVQQAL SMSLVGDKAK VRHGLQSILR
ETDADEIMVN GQIFDHQARL HSFELAMDVK EELLG
Length

335

Mol. Wt

37.13 kDa

pI

6.4 (calculated)

Extinction coefficient

35,410 - 35,535 (calc based on 9 Y, 4 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

8..306

PF00296 Luciferase-like monooxygenase

PMID:19920124[7]

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Structure
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Structures

<beststructure> gene=yhbW taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131052

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947677

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010385

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ADV5

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7654

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12792

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947677

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004204

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2644

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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