yhbV:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YhbV

Synonyms

predicted protease[1], B3159[2][1], YhbV[2][1] , ECK3147, JW5530, b3159

Product description

predicted protease[2][3]

Function unknown, U32 peptidase family[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006508

proteolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001539

P

Seeded from EcoCyc (v14.0)

complete

GO:0008233

peptidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001539

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAVRKAMKYS LGPVLWYWPK ETLEEFYQQA ATSSADVIYL GEAVCSKRRA TKVGDWLEMA
KSLAGSGKQI VLSTLALVQA SSELGELKRY VENGEFLIEA SDLGVVNMCA ERKLPFVAGH
ALNCYNAVTL KILLKQGMMR WCMPVELSRD WLVNLLNQCD ELGIRNQFEV EVLSYGHLPL
AYSARCFTAR SEDRPKDECE TCCIKYPNGR NVLSQENQQV FVLNGIQTMS GYVYNLGNEL
ASMQGLVDVV RLSPQGTDTF AMLDAFRANE NGAAPLPLTA NSDCNGYWRR LAGLELQA
Length

298

Mol. Wt

33.191 kDa

pI

5.4 (calculated)

Extinction coefficient

50,880 - 52,130 (calc based on 12 Y, 6 W, and 10 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

76..287

PF01136 Peptidase family U32

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yhbV taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111549

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:949117

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010382

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P45475

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7653

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12791

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:949117

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004203

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2643

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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