yhbQ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YhbQ

Synonyms

predicted endonuclease[1], B3155[2][1], YhbQ[2][1] , ECK3143, JW3124, b3155

Product description

predicted endonuclease[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0004518

nuclease activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000305

F

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000305

C

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000305

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplA

PMID:16606699[5]

Experiment(s):EBI-1144937

Protein

smp

PMID:16606699[5]

Experiment(s):EBI-1144937

Protein

rpsD

PMID:16606699[5]

Experiment(s):EBI-1144937

Protein

rpsC

PMID:16606699[5]

Experiment(s):EBI-1144937

Protein

ompL

PMID:16606699[5]

Experiment(s):EBI-1144937

Protein

rplD

PMID:16606699[5]

Experiment(s):EBI-1144937

Protein

trxC

PMID:16606699[5]

Experiment(s):EBI-1144937

Protein

slyD

PMID:16606699[5]

Experiment(s):EBI-1144937

Protein

rpsE

PMID:16606699[5]

Experiment(s):EBI-1144937

Protein

rpsB

PMID:16606699[5]

Experiment(s):EBI-1144937

Protein

yhdN

PMID:16606699[5]

Experiment(s):EBI-1144937

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1144937
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTPWFLYLIR TADNKLYTGI TTDVERRYQQ HQSGKGAKAL RGKGELTLVF SAPVGDRSLA
LRAEYRVKQL TKRQKERLVA EGAGFAELLS SLQTPEIKSD
Length

100

Mol. Wt

11.269 kDa

pI

10.2 (calculated)

Extinction coefficient

11,460 (calc based on 4 Y, 1 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

3..77

PF01541 GIY-YIG catalytic domain

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yhbQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131047

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947671

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010370

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P45472

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7649

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12786

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947671

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004199

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2639

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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