yhaC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YhaC

Synonyms

predicted protein[1], B3121[2][1], YhaC[2][1] , ECK3110, JW3092, b3121

Product description

predicted protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006974

response to DNA damage stimulus

PMID:11967071[5]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MFPVSSIGND ISSDLVRRKM NDLPESPTGN NLEALAPGIE KLKQTSIEMV TLLNTLQPGG
KCIITGDFQK ELAYLQNVIL YNVSSLRLDF LGYNAQIIQR SDNTCELTIN EPLKNQEIST
GNININCPLK DIYNEIRRLN VIFSCGTGDI VDLSSLDLRN VDLDYYDFTD KHMANTILNP
FKLNSTNFTN ANMFQVNFVS STQNATISWD YLLKITPVLI SISDMYSEEK IKFVESCLNE
PGDITEEQLK IMRFAIIKSI PRATLTDKLE NELTKEIYKS SSKIINCLNR IKLTEMKEFS
SEKIYDYIDI IIEDYENTKE NAYLVVPQIN YTMDLNIEDS SSEELLSDNT LEKDENSPDN
GFEVGEYNTY EAYNSEKQYF TREDYTYDYD LLNAI
Length

395

Mol. Wt

45.253 kDa

pI

4.3 (calculated)

Extinction coefficient

36,790 - 37,540 (calc based on 21 Y, 1 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=yhaC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131014

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947557

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010263

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P11864

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11174

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11174

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947557

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001156

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1161

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Khil, PP & Camerini-Otero, RD (2002) Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44 89-105 PubMed

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