ygiC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YgiC

Synonyms

predicted enzyme[1], B3038[2][1], YgiC[2][1] , ECK3029, JW3006, b3038

Product description

conserved protein[2]; putative synthetase/amidase[3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplP

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

rplQ

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

rplO

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

rpsG

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

rpsI

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

rpsC

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

rpsD

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

rplD

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

rpsE

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

phnN

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

galF

PMID:16606699[5]

Experiment(s):EBI-1144619

Protein

fur

PMID:16606699[5]

Experiment(s):EBI-1144619
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MERVSITERP DWREKAHEYG FNFHTMYGEP YWCEDAYYKL TLAQVEKLEE VTAELHQMCL
KVVEKVIASD ELMTKFRIPK HTWSFVRQSW LTHQPSLYSR LDLAWDGTGE PKLLENNADT
PTSLYEAAFF QWIWLEDQLN AGNLPEGSDQ FNSLQEKLID RFVELREQYG FQLLHLTCCR
DTVEDRGTIQ YLQDCATEAE IATEFLYIDD IGLGEKGQFT DLQDQVISNL FKLYPWEFML
REMFSTKLED AGVRWLEPAW KSIISNKALL PLLWEMFPNH PNLLPAYFAE DDHPQMEKYV
VKPIFSREGA NVSIIENGKT IEAAEGPYGE EGMIVQQFHP LPKFGDSYML IGSWLVNDQP
AGIGIREDRA LITQDMSRFY PHIFVE
Length

386

Mol. Wt

45.026 kDa

pI

4.5 (calculated)

Extinction coefficient

89,840 - 90,465 (calc based on 16 Y, 12 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

9..385

PF03738 Glutathionylspermidine synthase

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ygiC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130934

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947249

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009971

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ADT5

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11165

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11165

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947249

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001148

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1153

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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