yggE:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YggE

Synonyms

conserved protein[1], B2922[2][1], YggE[2][1] , ECK2918, JW2889, b2922

Product description

conserved protein[2]; putative actin[3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rhaS

PMID:16606699[5]

Experiment(s):EBI-1144314

Protein

rhsA

PMID:16606699[5]

Experiment(s):EBI-1144314

Protein

gltJ

PMID:16606699[5]

Experiment(s):EBI-1144314

Protein

matC

PMID:16606699[5]

Experiment(s):EBI-1144314

Protein

yfhM

PMID:16606699[5]

Experiment(s):EBI-1144314

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1144314

Protein

wecG

PMID:16606699[5]

Experiment(s):EBI-1144314

Protein

yggG

PMID:16606699[5]

Experiment(s):EBI-1144314

Protein

rpmB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplT

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsH

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):7.841105

Protein

rpsI

PMID:19402753[6]

LCMS(ID Probability):99.1 MALDI(Z-score):6.318202

Protein

rpsF

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplM

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsK

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):9.594984

Protein

rpsM

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsD

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):36.905054

Protein

rfaD

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):24.247664

Protein

hupB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yggL

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

infC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

trkG

PMID:19402753[6]

LCMS(ID Probability):98.8

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKFKVIALAA LMGISGMAAQ ANELPDGPHI VTSGTASVDA VPDIATLAIE VNVAAKDAAT
AKKQADERVA QYISFLELNQ IAKKDISSAN LRTQPDYDYQ DGKSILKGYR AVRTVEVTLR
QLDKLNSLLD GALKAGLNEI RSVSLGVAQP DAYKDKARKA AIDNAIHQAQ ELANGFHRKL
GPVYSVRYHV SNYQPSPMVR MMKADAAPVS AQETYEQAAI QFDDQVDVVF QLEPVDQQPA
KTPAAQ
Length

246

Mol. Wt

26.635 kDa

pI

6.5 (calculated)

Extinction coefficient

13,410 (calc based on 9 Y, 0 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

30..232

PF04402 Protein of unknown function (DUF541)

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yggE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130823

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947398

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009588

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ADS6

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11244

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11244

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947398

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001220

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1225

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 6.19 6.20 6.21 6.22 6.23 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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