ygfT:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YgfT

Synonyms

fused predicted oxidoreductase: Fe-S subunit[1], nucleotide-binding subunit[1], B2887[2][1], YgfT[2][1] , ECK2882, JW5469, b2887

Product description

fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit[2][3]

Putative oxidoreductase, Fe-S subunit, function unknown; aegA paralog[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005506

iron ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0408

F

Seeded from EcoCyc (v14.0)

complete

GO:0006537

glutamate biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006006

P

Seeded from EcoCyc (v14.0)

complete

GO:0009055

electron carrier activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001450

F

Seeded from EcoCyc (v14.0)

complete

GO:0009055

electron carrier activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017900

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001327

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012285

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0016639

oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006006

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001327

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001450

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012285

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017900

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0411

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0004

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001327

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsN

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):11.431287

Protein

ruvA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):38.296594

Protein

mutT

PMID:19402753[5]

MALDI(Z-score):27.385673

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKGMQMNKFI AAEAAECIGC HACEIACAVA HNQENWPLSH SDFRPRIHVV GKGQAANPVA
CHHCNNAPCV TACPVNALTF QSDSVQLDEQ KCIGCKRCAI ACPFGVVEMV DTIAQKCDLC
NQRSSGTQAC IEVCPTQALR LMDDKGLQQI KVARQRKTAA GKASSDAQPS RSAALLPVNS
RKGADKISAS ERKTHFGEIY CGLDPQQATY ESDRCVYCAE KANCNWHCPL HNAIPDYIRL
VQEGKIIEAA ELCHQTSSLP EICGRVCPQD RLCEGACTLK DHSGAVSIGN LERYITDTAL
AMGWRPDVSK VVPRSEKVAV IGAGPAGLGC ADILARAGVQ VDVFDRHPEI GGMLTFGIPP
FKLDKTVLSQ RREIFTAMGI DFHLNCEIGR DITFSDLTSE YDAVFIGVGT YGMMRADLPH
EDAPGVIQAL PFLTAHTRQL MGLPESEEYP LTDVEGKRVV VLGGGDTTMD CLRTSIRLNA
ASVTCAYRRD EVSMPGSRKE VVNAREEGVE FQFNVQPQYI ACDEDGRLTA VGLIRTAMGE
PGPDGRRRPR PVAGSEFELP ADVLIMAFGF QAHAMPWLQG SGIKLDKWGL IQTGDVGYLP
TQTHLKKVFA GGDAVHGADL VVTAMAAGRQ AARDMLTLFD TKAS
Length

644

Mol. Wt

69.663 kDa

pI

6.4 (calculated)

Extinction coefficient

43,890 - 47,765 (calc based on 11 Y, 5 W, and 31 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

80..103

PF00037 4Fe-4S binding domain

PMID:19920124[6]

Domain

312..387

PF00070 Pyridine nucleotide-disulphide oxidoreductase

PMID:19920124[6]

Domain

312..614

PF07992 Pyridine nucleotide-disulphide oxidoreductase

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ygfT taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111509

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:949018

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009473

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:Q46820

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7506

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13070

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:949018

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004068

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2881

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ 6.0 6.1 6.2 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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