ygdH:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YgdH

Synonyms

conserved protein[1], B2795[2][1], YgdH[2][1] , ECK2790, JW2766, b2795

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1143986
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MITHISPLGS MDMLSQLEVD MLKRTASSDL YQLFRNCSLA VLNSGSLTDN SKELLSRFEN
FDINVLRRER GVKLELINPP EEAFVDGRII RALQANLFAV LRDILFVYGQ IHNTVRFPNL
NLDNSVHITN LVFSILRNAR ALHVGEAPNM VVCWGGHSIN ENEYLYARRV GNQLGLRELN
ICTGCGPGAM EAPMKGAAVG HAQQRYKDSR FIGMTEPSII AAEPPNPLVN ELIIMPDIEK
RLEAFVRIAH GIIIFPGGVG TAEELLYLLG ILMNPANKDQ VLPLILTGPK ESADYFRVLD
EFVVHTLGEN ARRHYRIIID DAAEVARQMK KSMPLVKENR RDTGDAYSFN WSMRIAPDLQ
MPFEPSHENM ANLKLYPDQP VEVLAADLRR AFSGIVAGNV KEVGIRAIEE FGPYKINGDK
EIMRRMDDLL QGFVAQHRMK LPGSAYIPCY EICT
Length

454

Mol. Wt

50.973 kDa

pI

6.5 (calculated)

Extinction coefficient

30,370 - 31,120 (calc based on 13 Y, 2 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

190..329

PF03641 Possible lysine decarboxylase

PMID:19920124[6]

Domain

332..454

PF11892 Domain of unknown function (DUF3412)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ygdH taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130702

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947266

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009166

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ADR8

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12373

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12373

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947266

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002241

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2276

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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