ygcE:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YgcE

Synonyms

predicted kinase[1], B2776[2][1], YgcE[2][1] , ECK2770, JW5444, b2776

Product description

predicted kinase[2][3]

Putative sugar kinase, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000577

P

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018484

P

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018485

P

Seeded from EcoCyc (v14.0)

complete

GO:0016301

kinase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0418

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0016773

phosphotransferase activity, alcohol group as acceptor

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000577

F

Seeded from EcoCyc (v14.0)

complete

GO:0016773

phosphotransferase activity, alcohol group as acceptor

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018484

F

Seeded from EcoCyc (v14.0)

complete

GO:0016773

phosphotransferase activity, alcohol group as acceptor

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018485

F

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MSKKYIIGID GGSQSTKVVM YDLEGNVVCE GKGLLQPMHT PDADTAEHPD DDLWASLCFA
GHDLMSQFAG NKEDIVGIGL GSIRCCRALL KADGTPAAPL ISWQDARVTR PYEHTNPDVA
YVTSFSGYLT HRLTGEFKDN IANYFGQWPV DYKSWAWSED AAVMDKFNIP RHMLFDVQMP
GTVLGHITPQ AALATHFPAG LPVVCTTSDK PVEALGAGLL DDETAVISLG TYIALMMNGK
ALPKDPVAYW PIMSSIPQTL LYEGYGIRKG MWTVSWLRDM LGESLIQDAR AQDLSPEDLL
NKKASCVPPG CNGLMTVLDW LTNPWEPYKR GIMIGFDSSM DYAWIYRSIL ESVALTLKNN
YDNMCNEMNH FAKHVIITGG GSNSDLFMQI FADVFNLPAR RNAINGCASL GAAINTAVGL
GLYPDYATAV DNMVRVKDIF IPIESNAKRY DAMNKGIFKD LTKHTDVILK KSYEVMHGEL
GNVDSIQSWS NA
Length

492

Mol. Wt

54.178 kDa

pI

5.1 (calculated)

Extinction coefficient

94,310 - 95,435 (calc based on 19 Y, 12 W, and 9 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

5..120

PF00370 FGGY family of carbohydrate kinases, N-terminal domain

PMID:19920124[5]

Domain

225..420

PF02782 FGGY family of carbohydrate kinases, C-terminal domain

PMID:19920124[5]

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ygcE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130683

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946193

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009097

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P55138

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7442

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13033

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946193

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004005

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2848

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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